Functional clusters
Information
- Type Gene Ontology
- Description tRNA modification
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 3 | CH_arhy_552 | 3 | 3 | 0.000204489 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 3 | CH_arhy_553 | 3 | 3 | 0.000204489 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_684 | 3 | 4 | 0.000817073 |
| Eucalyptus grandis | Chr06 | 3 | CH_egr_662 | 6 | 55 | 0.0000496376 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_566 | 3 | 3 | 0.000104129 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_163 | 7 | 46 | 0.0000000155938 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_1012 | 3 | 3 | 0.000050514 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 4 | CH_arhy_552 | 3 | 3 | 0.000204489 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 4 | CH_arhy_553 | 3 | 3 | 0.000204489 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_684 | 3 | 4 | 0.000817073 |
| Eucalyptus grandis | Chr06 | 4 | CH_egr_662 | 6 | 55 | 0.0000496376 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_566 | 3 | 3 | 0.000104129 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_163 | 7 | 46 | 0.0000000155938 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_1012 | 3 | 3 | 0.000050514 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0002100 | tRNA wobble adenosine to inosine editing | 4 |
| GO:0002940 | tRNA N2-guanine methylation | 2 |
| GO:0002943 | tRNA dihydrouridine synthesis | 24 |
| GO:0002949 | tRNA threonylcarbamoyladenosine modification | 8 |
| GO:0019988 | charged-tRNA amino acid modification | 12 |
| GO:0030488 | tRNA methylation | 2 |
| GO:0031119 | tRNA pseudouridine synthesis | 10 |
| GO:0034227 | tRNA thio-modification | 12 |
| GO:0035600 | tRNA methylthiolation | 2 |
| GO:0080178 | 5-carbamoylmethyl uridine residue modification | 2 |
| GO:0101030 | tRNA-guanine transglycosylation | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |