Functional clusters
Information
- Type Gene Ontology
- Description gene silencing by RNA-directed DNA methylation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group3 | 3 | CH_ach_132 | 3 | 3 | 0.0000628095 |
| Brassica carinata | ChrC05 | 3 | CH_bca_187 | 4 | 4 | 0.0000000318964 |
| Brassica carinata | ChrB02 | 3 | CH_bca_2 | 10 | 11 | 4.51354e-26 |
| Brassica carinata | ChrB06 | 3 | CH_bca_512 | 3 | 3 | 0.0000426313 |
| Brassica oleracea | C7 | 3 | CH_bol_129 | 4 | 6 | 0.000000233893 |
| Capsicum annuum | PGAv.1.6.scaffold649 | 3 | CH_can_324 | 3 | 4 | 0.0000941138 |
| Capsicum annuum | PGAv.1.6.scaffold572 | 3 | CH_can_357 | 3 | 5 | 0.000235114 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_132 | 4 | 5 | 0.000000291547 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_201 | 3 | 3 | 0.0000437522 |
| Fragaria x ananassa | Fvb5-3 | 3 | CH_fan_427 | 3 | 5 | 0.000213793 |
| Olea europaea | chr15 | 3 | CH_oeu_121 | 3 | 3 | 0.00000983037 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_284 | 4 | 14 | 0.0000267014 |
| Quercus lobata | 11 | 3 | CH_qlo_850 | 3 | 5 | 0.000179525 |
| Solanum lycopersicum | SL4.0ch08 | 3 | CH_sly_18 | 15 | 68 | 3.93507e-23 |
| Solanum lycopersicum | SL4.0ch08 | 3 | CH_sly_25 | 10 | 13 | 2.98951e-21 |
| Schrenkiella parvula | ch5-1 | 3 | CH_spa_104 | 3 | 3 | 0.0000377536 |
| Solanum pennellii | Spenn-ch08 | 3 | CH_spe_170 | 4 | 6 | 0.000000987934 |
| Solanum pennellii | Spenn-ch08 | 3 | CH_spe_86 | 5 | 7 | 0.00000000144575 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_352 | 3 | 3 | 0.0000306077 |
| Trochodendron aralioides | group11 | 3 | CH_tar_248 | 3 | 3 | 0.0000353872 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_188 | 3 | 3 | 0.0000426335 |
| Actinidia chinensis | Lachesis_group3 | 4 | CH_ach_132 | 3 | 3 | 0.0000628095 |
| Brassica carinata | ChrC05 | 4 | CH_bca_187 | 4 | 4 | 0.0000000318964 |
| Brassica carinata | ChrB02 | 4 | CH_bca_2 | 10 | 11 | 4.51354e-26 |
| Brassica carinata | ChrB06 | 4 | CH_bca_512 | 3 | 3 | 0.0000426313 |
| Brassica oleracea | C7 | 4 | CH_bol_129 | 4 | 6 | 0.000000233893 |
| Capsicum annuum | PGAv.1.6.scaffold649 | 4 | CH_can_324 | 3 | 4 | 0.0000941138 |
| Capsicum annuum | PGAv.1.6.scaffold572 | 4 | CH_can_357 | 3 | 5 | 0.000235114 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_132 | 4 | 5 | 0.000000291547 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_201 | 3 | 3 | 0.0000437522 |
| Fragaria x ananassa | Fvb5-3 | 4 | CH_fan_427 | 3 | 5 | 0.000213793 |
| Olea europaea | chr15 | 4 | CH_oeu_121 | 3 | 3 | 0.00000983037 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_284 | 4 | 14 | 0.0000267014 |
| Quercus lobata | 11 | 4 | CH_qlo_850 | 3 | 5 | 0.000179525 |
| Solanum lycopersicum | SL4.0ch08 | 4 | CH_sly_18 | 15 | 68 | 3.93507e-23 |
| Solanum lycopersicum | SL4.0ch08 | 4 | CH_sly_25 | 10 | 13 | 2.98951e-21 |
| Schrenkiella parvula | ch5-1 | 4 | CH_spa_104 | 3 | 3 | 0.0000377536 |
| Solanum pennellii | Spenn-ch08 | 4 | CH_spe_170 | 4 | 6 | 0.000000987934 |
| Solanum pennellii | Spenn-ch08 | 4 | CH_spe_86 | 5 | 7 | 0.00000000144575 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_352 | 3 | 3 | 0.0000306077 |
| Trochodendron aralioides | group11 | 4 | CH_tar_248 | 3 | 3 | 0.0000353872 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_188 | 3 | 3 | 0.0000426335 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |