Functional clusters

Information

  • Type Gene Ontology
  • Description cellular macromolecule catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corchorus olitorius AWUE01020860.1 3 CH_col_65 7 24 0.000166055
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_470 4 4 0.000594003
Prunus persica Pp07 3 CH_ppe_412 8 37 0.0003934
Rhododendron simsii chr07 3 CH_rsi_537 10 78 0.000985743
Sequoiadendron giganteum chr1 3 CH_sgi_839 6 11 0.00000879998
Vanilla planifolia CM028157.1 3 CH_vpl_77 13 65 0.0000000897057
Corchorus olitorius AWUE01020860.1 4 CH_col_65 7 24 0.000166055
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_470 4 4 0.000594003
Prunus persica Pp07 4 CH_ppe_412 8 37 0.0003934
Rhododendron simsii chr07 4 CH_rsi_537 10 78 0.000985743
Sequoiadendron giganteum chr1 4 CH_sgi_839 6 11 0.00000879998
Vanilla planifolia CM028157.1 4 CH_vpl_77 13 65 0.0000000897057

Available child term results

Ontology identifier Description Number of clusters
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000292 RNA fragment catabolic process 4
GO:0000737 DNA catabolic process, endonucleolytic 16
GO:0006308 DNA catabolic process 40
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006516 glycoprotein catabolic process 2
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010498 proteasomal protein catabolic process 2
GO:0016075 rRNA catabolic process 6
GO:0016598 protein arginylation 2
GO:0016998 cell wall macromolecule catabolic process 8
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0043632 modification-dependent macromolecule catabolic process 4
GO:0044257 cellular protein catabolic process 2
GO:0045493 xylan catabolic process 76
GO:0048255 mRNA stabilization 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001