Functional clusters

Information

  • Type Gene Ontology
  • Description isoprenoid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 3 CH_aar_48 7 11 0.00000000060643
Arabidopsis thaliana Chr3 3 CH_ath_123 6 12 0.00000001352
Brassica rapa A01 3 CH_bra_174 4 5 0.0000583713
Brassica rapa A03 3 CH_bra_212 4 6 0.00017456
Coffea canephora chr3 3 CH_ccan_48 6 29 0.000000000896527
Citrus clementina scaffold_6 3 CH_ccl_251 5 8 0.0000103589
Cardamine hirsuta Chr3 3 CH_chi_102 6 9 0.0000000387947
Capsella rubella scaffold_3 3 CH_cru_165 5 8 0.00000443049
Eutrema salsugineum scaffold_13 3 CH_esa_174 4 6 0.000173289
Schrenkiella parvula ch3-1 3 CH_spa_179 4 7 0.000389047
Schrenkiella parvula ch3-1 3 CH_spa_62 5 7 0.00000105128
Tripterygium wilfordii NC_052244.1 3 CH_twi_192 5 8 0.0000418906
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_331 4 6 0.000473181
Aethionema arabicum LG-8 4 CH_aar_48 7 11 0.00000000060643
Arabidopsis thaliana Chr3 4 CH_ath_123 6 12 0.00000001352
Brassica rapa A01 4 CH_bra_174 4 5 0.0000583713
Brassica rapa A03 4 CH_bra_212 4 6 0.00017456
Coffea canephora chr3 4 CH_ccan_48 6 29 0.000000000896527
Citrus clementina scaffold_6 4 CH_ccl_251 5 8 0.0000103589
Cardamine hirsuta Chr3 4 CH_chi_102 6 9 0.0000000387947
Capsella rubella scaffold_3 4 CH_cru_165 5 8 0.00000443049
Eutrema salsugineum scaffold_13 4 CH_esa_174 4 6 0.000173289
Schrenkiella parvula ch3-1 4 CH_spa_179 4 7 0.000389047
Schrenkiella parvula ch3-1 4 CH_spa_62 5 7 0.00000105128
Tripterygium wilfordii NC_052244.1 4 CH_twi_192 5 8 0.0000418906
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_331 4 6 0.000473181

Available child term results

Ontology identifier Description Number of clusters
GO:0009686 gibberellin biosynthetic process 2
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0016094 polyprenol biosynthetic process 4
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016102 diterpenoid biosynthetic process 82
GO:0016104 triterpenoid biosynthetic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016123 xanthophyll biosynthetic process 2
GO:0019408 dolichol biosynthetic process 18
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0043693 monoterpene biosynthetic process 4
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0051762 sesquiterpene biosynthetic process 14
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901601 strigolactone biosynthetic process 10
GO:1901937 beta-caryophyllene biosynthetic process 4
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904964 positive regulation of phytol biosynthetic process 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001