Functional clusters

Information

  • Type Gene Ontology
  • Description mRNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_9 14 16 7.67557e-17
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_9 14 16 7.67557e-17

Available child term results

Ontology identifier Description Number of clusters
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 20
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006376 mRNA splice site selection 8
GO:0006397 mRNA processing 8
GO:0009299 mRNA transcription 4
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0080009 mRNA methylation 12
GO:0080156 mitochondrial mRNA modification 10
GO:0090615 mitochondrial mRNA processing 10
GO:0090617 mitochondrial mRNA 5'-end processing 74
GO:0097222 mitochondrial mRNA polyadenylation 6
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:1900871 chloroplast mRNA modification 8
GO:1903311 regulation of mRNA metabolic process 22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001