Functional clusters

Information

  • Type Gene Ontology
  • Description chitin catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 3 CH_acertr_37 5 6 0.00000000000222495
Actinidia chinensis Lachesis_group26 3 CH_ach_69 3 3 0.00000126593
Arabidopsis lyrata scaffold_4 3 CH_aly_10 7 8 3.35295e-19
Avicennia marina ScioBoG_102837_HRSCAF_103074 3 CH_ama_33 4 25 0.00000305156
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 3 CH_arhy_161 5 7 0.000000000021486
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 3 CH_arhy_388 3 3 0.00000604342
Amborella trichopoda AmTr_v1.0_scaffold00001 3 CH_atr_23 7 12 1.00775e-16
Brassica carinata ChrC01 3 CH_bca_26 6 6 0.00000000000000230584
Brassica carinata ChrB01 3 CH_bca_34 6 7 0.0000000000000161337
Brassica carinata ChrB06 3 CH_bca_449 3 3 0.000016057
Brassica napus C03 3 CH_bna_22 7 9 3.48371e-17
Brassica napus A03 3 CH_bna_40 6 7 0.0000000000000140414
Brassica napus A05 3 CH_bna_436 3 4 0.0000637614
Brassica napus C03 3 CH_bna_483 3 5 0.000159341
Brassica oleracea C8 3 CH_bol_341 3 8 0.000363735
Brassica oleracea C3 3 CH_bol_50 5 7 0.0000000000256036
Brassica rapa A03 3 CH_bra_31 5 6 0.0000000000064959
Beta vulgaris Chr3_EL10_PGA_scaffold7 3 CH_bvu_149 5 67 0.0000204769
Beta vulgaris Chr8_EL10_PGA_scaffold4 3 CH_bvu_18 7 11 1.62603e-16
Camellia sinensis var. sinensis Chr9 3 CH_camsi_15 14 76 3.92995e-26
Camellia sinensis var. sinensis Chr2 3 CH_camsi_274 4 6 0.000000200997
Camellia sinensis var. sinensis Chr1 3 CH_camsi_349 4 9 0.00000168548
Cannabis sativa NC_044371.1 3 CH_cansat_163 3 3 0.0000086023
Cannabis sativa NC_044373.1 3 CH_cansat_205 4 25 0.0000636694
Capsicum annuum PGAv.1.6.scaffold890 3 CH_can_131 4 6 0.000000012552
Chara braunii BFEA01000111 3 CH_cbr_10 5 11 0.0000000000000927404
Coffea canephora chr7 3 CH_ccan_74 3 6 0.0000000495166
Coffea canephora chr3 3 CH_ccan_86 4 57 0.000000107774
Citrus clementina scaffold_8 3 CH_ccl_266 3 4 0.0000226007
Citrus clementina scaffold_3 3 CH_ccl_45 6 7 0.00000000000000468495
Ceratophyllum demersum 7 3 CH_cde_1 12 16 2.89422e-35
Cardamine hirsuta Chr4 3 CH_chi_6 10 11 2.59606e-28
Carya illinoinensis Chr02 3 CH_cil_12 11 14 4.26423e-27
Carya illinoinensis Chr06 3 CH_cil_142 5 6 0.000000000382141
Citrullus lanatus CG_Chr01 3 CH_cla_26 4 4 0.00000000209678
Cucumis melo chr08 3 CH_cme_29 5 5 0.000000000000191214
Corchorus olitorius AWUE01017978.1 3 CH_col_42 3 3 0.00000256002
Chenopodium quinoa C_Quinoa_Scaffold_4446 3 CH_cqu_153 4 6 0.000000131059
Chenopodium quinoa C_Quinoa_Scaffold_4413 3 CH_cqu_51 6 8 0.0000000000000892677
Capsella rubella scaffold_4 3 CH_cru_4 9 10 1.07016e-24
Cucumis sativus L. chr6 3 CH_csa_36 5 5 0.000000000000288496
Daucus carota DCARv2_Chr4 3 CH_dca_194 3 4 0.00000888125
Davidia involucrata GWHABJS00000002 3 CH_din_180 3 3 0.00000427725
Davidia involucrata GWHABJS00000016 3 CH_din_23 6 6 2.7294e-16
Davidia involucrata GWHABJS00000014 3 CH_din_77 4 4 0.00000000181837
Durio zibethinus NW_019167904.1 3 CH_dzi_41 5 5 0.00000000000147132
Durio zibethinus NW_019168470.1 3 CH_dzi_49 5 6 0.00000000000882449
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_69 4 6 0.00000000201204
Eucalyptus grandis Chr09 3 CH_egr_255 6 12 0.00000000000844804
Eucalyptus grandis Chr08 3 CH_egr_43 10 10 1.71775e-27
Erythranthe guttata scaffold_7 3 CH_egut_250 3 9 0.0000373733
Eutrema salsugineum scaffold_22 3 CH_esa_8 7 7 1.75768e-19
Fragaria x ananassa Fvb1-4 3 CH_fan_258 3 3 0.00000633809
Fragaria x ananassa Fvb1-1 3 CH_fan_259 3 3 0.00000633809
Fragaria x ananassa Fvb4-3 3 CH_fan_393 3 6 0.000126653
Fragaria vesca Fvb1 3 CH_fve_15 7 7 1.65925e-19
Fragaria vesca Fvb4 3 CH_fve_319 3 8 0.000281945
Gossypium hirsutum A03 3 CH_ghi_179 4 4 0.00000000639286
Gossypium hirsutum D02 3 CH_ghi_180 4 4 0.00000000639286
Gossypium hirsutum D09 3 CH_ghi_205 4 5 0.0000000319509
Gossypium hirsutum A09 3 CH_ghi_222 4 6 0.0000000958124
Gossypium hirsutum D01 3 CH_ghi_362 3 3 0.0000122776
Gossypium hirsutum A10 3 CH_ghi_408 3 4 0.0000490904
Gossypium raimondii Chr05 3 CH_gra_165 3 3 0.00000417762
Gossypium raimondii Chr11 3 CH_gra_186 3 4 0.0000167047
Gossypium raimondii Chr06 3 CH_gra_99 4 5 0.00000000895597
Helianthus annuus HanXRQChr03 3 CH_han_181 4 4 0.00000000219
Helianthus annuus HanXRQChr14 3 CH_han_412 3 4 0.0000206006
Lonicera japonica GWHAAZE00000003 3 CH_lonja_18 13 17 1.77819e-32
Lonicera japonica GWHAAZE00000007 3 CH_lonja_366 4 14 0.0000376957
Lonicera japonica GWHAAZE00000004 3 CH_lonja_49 8 8 2.63516e-20
Lonicera japonica GWHAAZE00000009 3 CH_lonja_91 6 6 0.0000000000000337701
Lactuca sativa Lsat_1_v8_lg_3 3 CH_lsa_171 5 42 0.0000000569081
Magnolia biondii Chr08 3 CH_mbi_236 5 45 0.000000431845
Malus domestica Chr04 3 CH_mdo_415 3 7 0.000042244
Manihot esculenta Chromosome11 3 CH_mes_243 3 4 0.0000125247
Manihot esculenta Chromosome04 3 CH_mes_65 6 10 0.0000000000000320956
Marchantia polymorpha scaffold_147 3 CH_mpo_71 3 4 0.0000409616
Marchantia polymorpha scaffold_116 3 CH_mpo_72 3 4 0.0000409616
Medicago truncatula chr8 3 CH_mtr_348 3 3 0.000000921714
Medicago truncatula chr2 3 CH_mtr_389 3 4 0.00000368615
Oryza sativa ssp. japonica chr05 3 CH_osa_214 3 3 0.00000405411
Punica granatum NC_045129.1 3 CH_pgr_7 10 10 2.37357e-26
Punica granatum NC_045133.1 3 CH_pgr_73 5 5 0.0000000000404065
Prunus persica Pp01 3 CH_ppe_156 5 17 0.00000000625003
Papaver somniferum NC_039358.1 3 CH_pso_4 16 27 2.70518e-43
Papaver somniferum NC_039362.1 3 CH_pso_61 7 18 0.00000000000000880818
Populus trichocarpa Chr19 3 CH_ptr_84 5 5 0.00000000000129806
Populus trichocarpa Chr09 3 CH_ptr_85 5 5 0.00000000000129806
Phaseolus vulgaris Chr09 3 CH_pvu_98 4 6 0.0000000243477
Quercus lobata 11 3 CH_qlo_208 6 7 0.00000000000392155
Quercus lobata 11 3 CH_qlo_839 3 3 0.000158781
Quercus lobata CM012294 3 CH_qlo_87 9 13 1.20563e-18
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_443 3 4 0.0000146804
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_547 3 6 0.0000733573
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_75 7 16 6.15332e-16
Rhododendron simsii chr10 3 CH_rsi_12 14 25 4.21793e-33
Rhododendron simsii chr09 3 CH_rsi_73 6 6 0.0000000000000185438
Striga asiatica scaffold283 3 CH_sas_40 3 7 0.0000114916
Salvia bowleyana GWHASIU00000007 3 CH_sbo_148 4 6 0.0000000100825
Salvia bowleyana GWHASIU00000006 3 CH_sbo_17 10 13 3.29458e-29
Salix brachista GWHAAZH00000019 3 CH_sbr_47 5 5 0.00000000000137529
Simmondsia chinensis GWHAASQ00000008 3 CH_sci_74 3 3 0.000000608964
Sechium edule LG14 3 CH_sed_143 3 4 0.0000138903
Sechium edule LG10 3 CH_sed_44 5 7 0.0000000000122467
Sequoiadendron giganteum chr3 3 CH_sgi_170 7 7 2.78376e-16
Sequoiadendron giganteum chr1 3 CH_sgi_267 7 13 0.000000000000474576
Sequoiadendron giganteum chr7 3 CH_sgi_35 14 19 8.26021e-33
Sapria himalayana scaffold14_12630789 3 CH_shi_110 3 10 0.00000588251
Solanum lycopersicum SL4.0ch07 3 CH_sly_146 4 4 0.0000000166254
Solanum lycopersicum SL4.0ch02 3 CH_sly_157 4 5 0.0000000830737
Solanum lycopersicum SL4.0ch10 3 CH_sly_8 13 23 3.47146e-31
Selaginella moellendorffii scaffold_11 3 CH_smo_110 3 4 0.0000805015
Selaginella moellendorffii scaffold_85 3 CH_smo_25 6 21 0.000000000640156
Schrenkiella parvula ch4-6 3 CH_spa_13 5 9 0.0000000000466914
Solanum pennellii Spenn-ch02 3 CH_spe_249 3 5 0.0000201697
Solanum pennellii Spenn-ch10 3 CH_spe_37 5 5 0.000000000000181673
Solanum tuberosum ST4.03ch07 3 CH_stu_110 5 6 0.00000000000817038
Trochodendron aralioides group17 3 CH_tar_21 6 7 9.83765e-16
Trochodendron aralioides group5 3 CH_tar_223 3 4 0.0000121072
Theobroma cacao Chromosome_4 3 CH_tca_120 4 6 0.0000000126336
Utricularia gibba unitig_0 3 CH_ugi_9 5 6 0.0000000000000122379
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_65 4 4 0.00000000079447
Vanilla planifolia CM028150.1 3 CH_vpl_352 2 2 0.00073888
Vitis vinifera chr5 3 CH_vvi_22 9 13 2.76008e-23
Acer truncatum chr4 4 CH_acertr_37 5 6 0.00000000000222495
Actinidia chinensis Lachesis_group26 4 CH_ach_69 3 3 0.00000126593
Arabidopsis lyrata scaffold_4 4 CH_aly_10 7 8 3.35295e-19
Avicennia marina ScioBoG_102837_HRSCAF_103074 4 CH_ama_33 4 25 0.00000305156
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 4 CH_arhy_161 5 7 0.000000000021486
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 4 CH_arhy_388 3 3 0.00000604342
Amborella trichopoda AmTr_v1.0_scaffold00001 4 CH_atr_23 7 12 1.00775e-16
Brassica carinata ChrC01 4 CH_bca_26 6 6 0.00000000000000230584
Brassica carinata ChrB01 4 CH_bca_34 6 7 0.0000000000000161337
Brassica carinata ChrB06 4 CH_bca_449 3 3 0.000016057
Brassica napus C03 4 CH_bna_22 7 9 3.48371e-17
Brassica napus A03 4 CH_bna_40 6 7 0.0000000000000140414
Brassica napus A05 4 CH_bna_436 3 4 0.0000637614
Brassica napus C03 4 CH_bna_483 3 5 0.000159341
Brassica oleracea C8 4 CH_bol_341 3 8 0.000363735
Brassica oleracea C3 4 CH_bol_50 5 7 0.0000000000256036
Brassica rapa A03 4 CH_bra_31 5 6 0.0000000000064959
Beta vulgaris Chr3_EL10_PGA_scaffold7 4 CH_bvu_149 5 67 0.0000204769
Beta vulgaris Chr8_EL10_PGA_scaffold4 4 CH_bvu_18 7 11 1.62603e-16
Camellia sinensis var. sinensis Chr9 4 CH_camsi_15 14 76 3.92995e-26
Camellia sinensis var. sinensis Chr2 4 CH_camsi_274 4 6 0.000000200997
Camellia sinensis var. sinensis Chr1 4 CH_camsi_349 4 9 0.00000168548
Cannabis sativa NC_044371.1 4 CH_cansat_163 3 3 0.0000086023
Cannabis sativa NC_044373.1 4 CH_cansat_205 4 25 0.0000636694
Capsicum annuum PGAv.1.6.scaffold890 4 CH_can_131 4 6 0.000000012552
Chara braunii BFEA01000111 4 CH_cbr_10 5 11 0.0000000000000927404
Coffea canephora chr7 4 CH_ccan_74 3 6 0.0000000495166
Coffea canephora chr3 4 CH_ccan_86 4 57 0.000000107774
Citrus clementina scaffold_8 4 CH_ccl_266 3 4 0.0000226007
Citrus clementina scaffold_3 4 CH_ccl_45 6 7 0.00000000000000468495
Ceratophyllum demersum 7 4 CH_cde_1 12 16 2.89422e-35
Cardamine hirsuta Chr4 4 CH_chi_6 10 11 2.59606e-28
Carya illinoinensis Chr02 4 CH_cil_12 11 14 4.26423e-27
Carya illinoinensis Chr06 4 CH_cil_142 5 6 0.000000000382141
Citrullus lanatus CG_Chr01 4 CH_cla_26 4 4 0.00000000209678
Cucumis melo chr08 4 CH_cme_29 5 5 0.000000000000191214
Corchorus olitorius AWUE01017978.1 4 CH_col_42 3 3 0.00000256002
Chenopodium quinoa C_Quinoa_Scaffold_4446 4 CH_cqu_153 4 6 0.000000131059
Chenopodium quinoa C_Quinoa_Scaffold_4413 4 CH_cqu_51 6 8 0.0000000000000892677
Capsella rubella scaffold_4 4 CH_cru_4 9 10 1.07016e-24
Cucumis sativus L. chr6 4 CH_csa_36 5 5 0.000000000000288496
Daucus carota DCARv2_Chr4 4 CH_dca_194 3 4 0.00000888125
Davidia involucrata GWHABJS00000002 4 CH_din_180 3 3 0.00000427725
Davidia involucrata GWHABJS00000016 4 CH_din_23 6 6 2.7294e-16
Davidia involucrata GWHABJS00000014 4 CH_din_77 4 4 0.00000000181837
Durio zibethinus NW_019167904.1 4 CH_dzi_41 5 5 0.00000000000147132
Durio zibethinus NW_019168470.1 4 CH_dzi_49 5 6 0.00000000000882449
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_69 4 6 0.00000000201204
Eucalyptus grandis Chr09 4 CH_egr_255 6 12 0.00000000000844804
Eucalyptus grandis Chr08 4 CH_egr_43 10 10 1.71775e-27
Erythranthe guttata scaffold_7 4 CH_egut_250 3 9 0.0000373733
Eutrema salsugineum scaffold_22 4 CH_esa_8 7 7 1.75768e-19
Fragaria x ananassa Fvb1-4 4 CH_fan_258 3 3 0.00000633809
Fragaria x ananassa Fvb1-1 4 CH_fan_259 3 3 0.00000633809
Fragaria x ananassa Fvb4-3 4 CH_fan_393 3 6 0.000126653
Fragaria vesca Fvb1 4 CH_fve_15 7 7 1.65925e-19
Fragaria vesca Fvb4 4 CH_fve_319 3 8 0.000281945
Gossypium hirsutum A03 4 CH_ghi_179 4 4 0.00000000639286
Gossypium hirsutum D02 4 CH_ghi_180 4 4 0.00000000639286
Gossypium hirsutum D09 4 CH_ghi_205 4 5 0.0000000319509
Gossypium hirsutum A09 4 CH_ghi_222 4 6 0.0000000958124
Gossypium hirsutum D01 4 CH_ghi_362 3 3 0.0000122776
Gossypium hirsutum A10 4 CH_ghi_408 3 4 0.0000490904
Gossypium raimondii Chr05 4 CH_gra_165 3 3 0.00000417762
Gossypium raimondii Chr11 4 CH_gra_186 3 4 0.0000167047
Gossypium raimondii Chr06 4 CH_gra_99 4 5 0.00000000895597
Helianthus annuus HanXRQChr03 4 CH_han_181 4 4 0.00000000219
Helianthus annuus HanXRQChr14 4 CH_han_412 3 4 0.0000206006
Lonicera japonica GWHAAZE00000003 4 CH_lonja_18 13 17 1.77819e-32
Lonicera japonica GWHAAZE00000007 4 CH_lonja_366 4 14 0.0000376957
Lonicera japonica GWHAAZE00000004 4 CH_lonja_49 8 8 2.63516e-20
Lonicera japonica GWHAAZE00000009 4 CH_lonja_91 6 6 0.0000000000000337701
Lactuca sativa Lsat_1_v8_lg_3 4 CH_lsa_171 5 42 0.0000000569081
Magnolia biondii Chr08 4 CH_mbi_236 5 45 0.000000431845
Malus domestica Chr04 4 CH_mdo_415 3 7 0.000042244
Manihot esculenta Chromosome11 4 CH_mes_243 3 4 0.0000125247
Manihot esculenta Chromosome04 4 CH_mes_65 6 10 0.0000000000000320956
Marchantia polymorpha scaffold_147 4 CH_mpo_71 3 4 0.0000409616
Marchantia polymorpha scaffold_116 4 CH_mpo_72 3 4 0.0000409616
Medicago truncatula chr8 4 CH_mtr_348 3 3 0.000000921714
Medicago truncatula chr2 4 CH_mtr_389 3 4 0.00000368615
Oryza sativa ssp. japonica chr05 4 CH_osa_214 3 3 0.00000405411
Punica granatum NC_045129.1 4 CH_pgr_7 10 10 2.37357e-26
Punica granatum NC_045133.1 4 CH_pgr_73 5 5 0.0000000000404065
Prunus persica Pp01 4 CH_ppe_156 5 17 0.00000000625003
Papaver somniferum NC_039358.1 4 CH_pso_4 16 27 2.70518e-43
Papaver somniferum NC_039362.1 4 CH_pso_61 7 18 0.00000000000000880818
Populus trichocarpa Chr19 4 CH_ptr_84 5 5 0.00000000000129806
Populus trichocarpa Chr09 4 CH_ptr_85 5 5 0.00000000000129806
Phaseolus vulgaris Chr09 4 CH_pvu_98 4 6 0.0000000243477
Quercus lobata 11 4 CH_qlo_208 6 7 0.00000000000392155
Quercus lobata 11 4 CH_qlo_839 3 3 0.000158781
Quercus lobata CM012294 4 CH_qlo_87 9 13 1.20563e-18
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_443 3 4 0.0000146804
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_547 3 6 0.0000733573
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_75 7 16 6.15332e-16
Rhododendron simsii chr10 4 CH_rsi_12 14 25 4.21793e-33
Rhododendron simsii chr09 4 CH_rsi_73 6 6 0.0000000000000185438
Striga asiatica scaffold283 4 CH_sas_40 3 7 0.0000114916
Salvia bowleyana GWHASIU00000007 4 CH_sbo_148 4 6 0.0000000100825
Salvia bowleyana GWHASIU00000006 4 CH_sbo_17 10 13 3.29458e-29
Salix brachista GWHAAZH00000019 4 CH_sbr_47 5 5 0.00000000000137529
Simmondsia chinensis GWHAASQ00000008 4 CH_sci_74 3 3 0.000000608964
Sechium edule LG14 4 CH_sed_143 3 4 0.0000138903
Sechium edule LG10 4 CH_sed_44 5 7 0.0000000000122467
Sequoiadendron giganteum chr3 4 CH_sgi_170 7 7 2.78376e-16
Sequoiadendron giganteum chr1 4 CH_sgi_267 7 13 0.000000000000474576
Sequoiadendron giganteum chr7 4 CH_sgi_35 14 19 8.26021e-33
Sapria himalayana scaffold14_12630789 4 CH_shi_110 3 10 0.00000588251
Solanum lycopersicum SL4.0ch07 4 CH_sly_146 4 4 0.0000000166254
Solanum lycopersicum SL4.0ch02 4 CH_sly_157 4 5 0.0000000830737
Solanum lycopersicum SL4.0ch10 4 CH_sly_8 13 23 3.47146e-31
Selaginella moellendorffii scaffold_11 4 CH_smo_110 3 4 0.0000805015
Selaginella moellendorffii scaffold_85 4 CH_smo_25 6 21 0.000000000640156
Schrenkiella parvula ch4-6 4 CH_spa_13 5 9 0.0000000000466914
Solanum pennellii Spenn-ch02 4 CH_spe_249 3 5 0.0000201697
Solanum pennellii Spenn-ch10 4 CH_spe_37 5 5 0.000000000000181673
Solanum tuberosum ST4.03ch07 4 CH_stu_110 5 6 0.00000000000817038
Trochodendron aralioides group17 4 CH_tar_21 6 7 9.83765e-16
Trochodendron aralioides group5 4 CH_tar_223 3 4 0.0000121072
Theobroma cacao Chromosome_4 4 CH_tca_120 4 6 0.0000000126336
Utricularia gibba unitig_0 4 CH_ugi_9 5 6 0.0000000000000122379
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_65 4 4 0.00000000079447
Vanilla planifolia CM028150.1 4 CH_vpl_352 2 2 0.00073888
Vitis vinifera chr5 4 CH_vvi_22 9 13 2.76008e-23

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001