Functional clusters

Information

  • Type Gene Ontology
  • Description carbohydrate derivative metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Solanum lycopersicum SL4.0ch03 3 CH_sly_476 5 5 0.000302943
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_269 5 5 0.000222074
Solanum lycopersicum SL4.0ch03 4 CH_sly_476 5 5 0.000302943
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_269 5 5 0.000222074

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000270 peptidoglycan metabolic process 2
GO:0006002 fructose 6-phosphate metabolic process 8
GO:0006003 fructose 2,6-bisphosphate metabolic process 16
GO:0006024 glycosaminoglycan biosynthetic process 2
GO:0006032 chitin catabolic process 250
GO:0006045 N-acetylglucosamine biosynthetic process 2
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006096 glycolytic process 20
GO:0006104 succinyl-CoA metabolic process 6
GO:0006110 regulation of glycolytic process 2
GO:0006148 inosine catabolic process 18
GO:0006154 adenosine catabolic process 38
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006506 GPI anchor biosynthetic process 14
GO:0006516 glycoprotein catabolic process 2
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006680 glucosylceramide catabolic process 10
GO:0008618 7-methylguanosine metabolic process 12
GO:0009116 nucleoside metabolic process 50
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0009972 cytidine deamination 8
GO:0010405 arabinogalactan protein metabolic process 4
GO:0010406 classical arabinogalactan protein metabolic process 8
GO:0010407 non-classical arabinogalactan protein metabolic process 4
GO:0010409 extensin metabolic process 2
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0015936 coenzyme A metabolic process 10
GO:0015938 coenzyme A catabolic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0015986 ATP synthesis coupled proton transport 22
GO:0016139 glycoside catabolic process 4
GO:0016255 attachment of GPI anchor to protein 14
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019305 dTDP-rhamnose biosynthetic process 6
GO:0019374 galactolipid metabolic process 2
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019760 glucosinolate metabolic process 4
GO:0019761 glucosinolate biosynthetic process 2
GO:0019762 glucosinolate catabolic process 12
GO:0030388 fructose 1,6-bisphosphate metabolic process 20
GO:0032264 IMP salvage 18
GO:0033302 quercetin O-glucoside metabolic process 4
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033491 coniferin metabolic process 10
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0036066 protein O-linked fucosylation 14
GO:0042343 indole glucosinolate metabolic process 8
GO:0042344 indole glucosinolate catabolic process 2
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0046104 thymidine metabolic process 4
GO:0046109 uridine biosynthetic process 2
GO:0046167 glycerol-3-phosphate biosynthetic process 4
GO:0046168 glycerol-3-phosphate catabolic process 2
GO:0046710 GDP metabolic process 2
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080179 1-methylguanosine metabolic process 2
GO:0080180 2-methylguanosine metabolic process 8
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901038 cyanidin 3-O-glucoside metabolic process 14
GO:1901136 carbohydrate derivative catabolic process 4
GO:1901658 glycosyl compound catabolic process 2
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1903509 liposaccharide metabolic process 4
GO:1904380 endoplasmic reticulum mannose trimming 14
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001