Functional clusters
Information
- Type Gene Ontology
- Description regulation of phenylpropanoid metabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group22 | 3 | CH_ach_136 | 3 | 3 | 0.0000717728 |
| Brassica carinata | ChrB06 | 3 | CH_bca_194 | 4 | 5 | 0.0000000396512 |
| Corylus avellana | 1 | 3 | CH_cav_226 | 3 | 3 | 0.0000481091 |
| Corylus avellana | 2 | 3 | CH_cav_302 | 3 | 4 | 0.000192263 |
| Fragaria x ananassa | Fvb4-1 | 3 | CH_fan_281 | 4 | 11 | 0.000011478 |
| Lupinus albus | Lalb_Chr18 | 3 | CH_lal_220 | 3 | 3 | 0.0000377597 |
| Magnolia biondii | Chr03 | 3 | CH_mbi_670 | 3 | 7 | 0.000881958 |
| Oryza sativa ssp. japonica | chr07 | 3 | CH_osa_320 | 3 | 4 | 0.000119408 |
| Quercus lobata | 9 | 3 | CH_qlo_770 | 4 | 19 | 0.0000933027 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_437 | 3 | 3 | 0.0000130066 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_243 | 9 | 24 | 0.00000000000011914 |
| Sapria himalayana | scaffold17_11767850 | 3 | CH_shi_82 | 4 | 12 | 0.000000659098 |
| Trochodendron aralioides | group16 | 3 | CH_tar_261 | 3 | 3 | 0.0000534188 |
| Vanilla planifolia | CM028154.1 | 3 | CH_vpl_33 | 5 | 5 | 0.000000000112229 |
| Actinidia chinensis | Lachesis_group22 | 4 | CH_ach_136 | 3 | 3 | 0.0000717728 |
| Brassica carinata | ChrB06 | 4 | CH_bca_194 | 4 | 5 | 0.0000000396512 |
| Corylus avellana | 1 | 4 | CH_cav_226 | 3 | 3 | 0.0000481091 |
| Corylus avellana | 2 | 4 | CH_cav_302 | 3 | 4 | 0.000192263 |
| Fragaria x ananassa | Fvb4-1 | 4 | CH_fan_281 | 4 | 11 | 0.000011478 |
| Lupinus albus | Lalb_Chr18 | 4 | CH_lal_220 | 3 | 3 | 0.0000377597 |
| Magnolia biondii | Chr03 | 4 | CH_mbi_670 | 3 | 7 | 0.000881958 |
| Oryza sativa ssp. japonica | chr07 | 4 | CH_osa_320 | 3 | 4 | 0.000119408 |
| Quercus lobata | 9 | 4 | CH_qlo_770 | 4 | 19 | 0.0000933027 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_437 | 3 | 3 | 0.0000130066 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_243 | 9 | 24 | 0.00000000000011914 |
| Sapria himalayana | scaffold17_11767850 | 4 | CH_shi_82 | 4 | 12 | 0.000000659098 |
| Trochodendron aralioides | group16 | 4 | CH_tar_261 | 3 | 3 | 0.0000534188 |
| Vanilla planifolia | CM028154.1 | 4 | CH_vpl_33 | 5 | 5 | 0.000000000112229 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1901430 | positive regulation of syringal lignin biosynthetic process | 14 |
| GO:2000029 | regulation of proanthocyanidin biosynthetic process | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |