Functional clusters
Information
- Type Gene Ontology
- Description nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC02 | 3 | CH_bca_357 | 3 | 3 | 0.00000250458 |
| Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_471 | 3 | 5 | 0.0000305446 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_539 | 3 | 6 | 0.000061071 |
| Hydrangea macrophylla | Hma1.2p1_0758F.1 | 3 | CH_hma_16 | 6 | 13 | 0.000000000000301297 |
| Olea europaea | chr1 | 3 | CH_oeu_142 | 3 | 5 | 0.0000348536 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_177 | 6 | 6 | 6.23306e-16 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_820 | 3 | 3 | 0.00000630447 |
| Sapria himalayana | scaffold18_10761044 | 3 | CH_shi_46 | 4 | 9 | 0.0000000148296 |
| Trochodendron aralioides | group7 | 3 | CH_tar_209 | 3 | 3 | 0.0000061637 |
| Brassica carinata | ChrC02 | 4 | CH_bca_357 | 3 | 3 | 0.00000250458 |
| Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_471 | 3 | 5 | 0.0000305446 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_539 | 3 | 6 | 0.000061071 |
| Hydrangea macrophylla | Hma1.2p1_0758F.1 | 4 | CH_hma_16 | 6 | 13 | 0.000000000000301297 |
| Olea europaea | chr1 | 4 | CH_oeu_142 | 3 | 5 | 0.0000348536 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_177 | 6 | 6 | 6.23306e-16 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_820 | 3 | 3 | 0.00000630447 |
| Sapria himalayana | scaffold18_10761044 | 4 | CH_shi_46 | 4 | 9 | 0.0000000148296 |
| Trochodendron aralioides | group7 | 4 | CH_tar_209 | 3 | 3 | 0.0000061637 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |