Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of macromolecule metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrus clementina scaffold_5 3 CH_ccl_408 5 7 0.000702724
Magnolia biondii Chr03 3 CH_mbi_328 8 26 0.00000735683
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_528 5 7 0.0000551132
Citrus clementina scaffold_5 4 CH_ccl_408 5 7 0.000702724
Magnolia biondii Chr03 4 CH_mbi_328 8 26 0.00000735683
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_528 5 7 0.0000551132

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0010628 positive regulation of gene expression 4
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0032147 activation of protein kinase activity 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033184 positive regulation of histone ubiquitination 4
GO:0045727 positive regulation of translation 18
GO:0045732 positive regulation of protein catabolic process 2
GO:0045739 positive regulation of DNA repair 4
GO:0045815 positive regulation of gene expression, epigenetic 2
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0051254 positive regulation of RNA metabolic process 4
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051973 positive regulation of telomerase activity 14
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900369 negative regulation of RNA interference 4
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901537 positive regulation of DNA demethylation 18
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:2000234 positive regulation of rRNA processing 8
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000636 positive regulation of primary miRNA processing 6
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001