Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin-dependent protein catabolic process via the N-end rule pathway
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr8 | 3 | CH_acertr_113 | 3 | 3 | 0.00000002982 |
Brassica carinata | ChrC03 | 3 | CH_bca_871 | 2 | 2 | 0.00059854 |
Corylus avellana | 8 | 3 | CH_cav_371 | 2 | 2 | 0.000460017 |
Ceratophyllum demersum | 2 | 3 | CH_cde_137 | 2 | 2 | 0.000236939 |
Carica papaya | supercontig_228 | 3 | CH_cpa_221 | 2 | 2 | 0.000285198 |
Chenopodium quinoa | C_Quinoa_Scaffold_1846 | 3 | CH_cqu_225 | 3 | 6 | 0.00000235671 |
Eucalyptus grandis | Chr11 | 3 | CH_egr_772 | 2 | 2 | 0.000175582 |
Oryza sativa ssp. japonica | chr01 | 3 | CH_osa_341 | 2 | 2 | 0.000158437 |
Petunia axillaris | Peaxi162Scf00094 | 3 | CH_pax_291 | 2 | 2 | 0.000422134 |
Simmondsia chinensis | GWHAASQ00000020 | 3 | CH_sci_78 | 3 | 6 | 0.000000869754 |
Sapria himalayana | scaffold11_13529635 | 3 | CH_shi_199 | 2 | 2 | 0.000171541 |
Utricularia gibba | unitig_0 | 3 | CH_ugi_94 | 2 | 2 | 0.000246144 |
Vitis vinifera | chr8 | 3 | CH_vvi_373 | 2 | 2 | 0.000456378 |
Acer truncatum | chr8 | 4 | CH_acertr_113 | 3 | 3 | 0.00000002982 |
Brassica carinata | ChrC03 | 4 | CH_bca_871 | 2 | 2 | 0.00059854 |
Corylus avellana | 8 | 4 | CH_cav_371 | 2 | 2 | 0.000460017 |
Ceratophyllum demersum | 2 | 4 | CH_cde_137 | 2 | 2 | 0.000236939 |
Carica papaya | supercontig_228 | 4 | CH_cpa_221 | 2 | 2 | 0.000285198 |
Chenopodium quinoa | C_Quinoa_Scaffold_1846 | 4 | CH_cqu_225 | 3 | 6 | 0.00000235671 |
Eucalyptus grandis | Chr11 | 4 | CH_egr_772 | 2 | 2 | 0.000175582 |
Oryza sativa ssp. japonica | chr01 | 4 | CH_osa_341 | 2 | 2 | 0.000158437 |
Petunia axillaris | Peaxi162Scf00094 | 4 | CH_pax_291 | 2 | 2 | 0.000422134 |
Simmondsia chinensis | GWHAASQ00000020 | 4 | CH_sci_78 | 3 | 6 | 0.000000869754 |
Sapria himalayana | scaffold11_13529635 | 4 | CH_shi_199 | 2 | 2 | 0.000171541 |
Utricularia gibba | unitig_0 | 4 | CH_ugi_94 | 2 | 2 | 0.000246144 |
Vitis vinifera | chr8 | 4 | CH_vvi_373 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |