Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of siderophore biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 3 | CH_aar_231 | 2 | 4 | 0.000547345 |
| Acer truncatum | chr1 | 3 | CH_acertr_311 | 2 | 2 | 0.000070497 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 3 | CH_amhyb_109 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR02 | 3 | CH_aox_237 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_471 | 2 | 2 | 0.000171895 |
| Brassica carinata | ChrB02 | 3 | CH_bca_400 | 3 | 3 | 0.00000578233 |
| Brassica carinata | ChrB02 | 3 | CH_bca_401 | 3 | 3 | 0.00000578233 |
| Brassica carinata | ChrC07 | 3 | CH_bca_6 | 9 | 12 | 2.21512e-24 |
| Brassica carinata | ChrC02 | 3 | CH_bca_87 | 5 | 8 | 0.0000000000439819 |
| Brassica napus | C06 | 3 | CH_bna_142 | 4 | 6 | 0.0000000090515 |
| Brassica napus | A09 | 3 | CH_bna_267 | 3 | 3 | 0.00000232305 |
| Brassica napus | C08 | 3 | CH_bna_385 | 3 | 5 | 0.000023221 |
| Brassica napus | A04 | 3 | CH_bna_71 | 5 | 8 | 0.00000000000846619 |
| Brassica napus | C04 | 3 | CH_bna_76 | 5 | 9 | 0.0000000000190449 |
| Brassica oleracea | C8 | 3 | CH_bol_145 | 3 | 3 | 0.000000458344 |
| Brassica oleracea | C4 | 3 | CH_bol_176 | 3 | 4 | 0.00000183312 |
| Brassica rapa | A04 | 3 | CH_bra_62 | 4 | 8 | 0.0000000118733 |
| Brassica rapa | A09 | 3 | CH_bra_97 | 3 | 3 | 0.000000790707 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 3 | CH_bvu_46 | 4 | 9 | 0.000000000214495 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_54 | 4 | 6 | 0.0000000000127413 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 3 | CH_can_311 | 2 | 2 | 0.0000826105 |
| Corylus avellana | 10 | 3 | CH_cav_125 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa08 | 3 | CH_cfa_322 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_337 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr04 | 3 | CH_cla_36 | 3 | 4 | 0.0000000472183 |
| Cucumis melo | chr08 | 3 | CH_cme_180 | 2 | 2 | 0.0000667111 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_299 | 2 | 2 | 0.000438693 |
| Cucumis sativus L. | chr4 | 3 | CH_csa_190 | 2 | 2 | 0.0000834759 |
| Daucus carota | DCARv2_Chr6 | 3 | CH_dca_139 | 3 | 9 | 0.000000512433 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_86 | 3 | 4 | 0.0000000120811 |
| Eutrema salsugineum | scaffold_19 | 3 | CH_esa_76 | 3 | 3 | 0.0000000869853 |
| Glycine max | Gm03 | 3 | CH_gma_412 | 2 | 3 | 0.000341591 |
| Helianthus annuus | HanXRQChr10 | 3 | CH_han_131 | 4 | 5 | 0.0000000000605881 |
| Lupinus albus | Lalb_Chr25 | 3 | CH_lal_295 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr1 | 3 | CH_lja_88 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_47 | 5 | 6 | 3.14155e-16 |
| Malus domestica | Chr14 | 3 | CH_mdo_407 | 2 | 2 | 0.0000379212 |
| Medicago truncatula | chr1 | 3 | CH_mtr_263 | 3 | 4 | 0.0000000405134 |
| Olea europaea | chr2 | 3 | CH_oeu_20 | 4 | 5 | 0.0000000000114073 |
| Prunus persica | Pp07 | 3 | CH_ppe_64 | 5 | 8 | 0.0000000000000130067 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_105 | 3 | 5 | 0.000000163251 |
| Populus trichocarpa | Chr06 | 3 | CH_ptr_362 | 2 | 2 | 0.0001734 |
| Salix brachista | GWHAAZH00000006 | 3 | CH_sbr_276 | 2 | 3 | 0.000189036 |
| Simmondsia chinensis | GWHAASQ00000013 | 3 | CH_sci_217 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_198 | 5 | 5 | 0.00000000000000532293 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_147 | 3 | 4 | 0.00000002067 |
| Schrenkiella parvula | ch5-1 | 3 | CH_spa_190 | 2 | 2 | 0.000472404 |
| Selenicereus undatus | Scaffold_3410 | 3 | CH_sun_18 | 4 | 7 | 0.0000000000402851 |
| Aethionema arabicum | LG-10 | 4 | CH_aar_231 | 2 | 4 | 0.000547345 |
| Acer truncatum | chr1 | 4 | CH_acertr_311 | 2 | 2 | 0.000070497 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 4 | CH_amhyb_109 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR02 | 4 | CH_aox_237 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_471 | 2 | 2 | 0.000171895 |
| Brassica carinata | ChrB02 | 4 | CH_bca_400 | 3 | 3 | 0.00000578233 |
| Brassica carinata | ChrB02 | 4 | CH_bca_401 | 3 | 3 | 0.00000578233 |
| Brassica carinata | ChrC07 | 4 | CH_bca_6 | 9 | 12 | 2.21512e-24 |
| Brassica carinata | ChrC02 | 4 | CH_bca_87 | 5 | 8 | 0.0000000000439819 |
| Brassica napus | C06 | 4 | CH_bna_142 | 4 | 6 | 0.0000000090515 |
| Brassica napus | A09 | 4 | CH_bna_267 | 3 | 3 | 0.00000232305 |
| Brassica napus | C08 | 4 | CH_bna_385 | 3 | 5 | 0.000023221 |
| Brassica napus | A04 | 4 | CH_bna_71 | 5 | 8 | 0.00000000000846619 |
| Brassica napus | C04 | 4 | CH_bna_76 | 5 | 9 | 0.0000000000190449 |
| Brassica oleracea | C8 | 4 | CH_bol_145 | 3 | 3 | 0.000000458344 |
| Brassica oleracea | C4 | 4 | CH_bol_176 | 3 | 4 | 0.00000183312 |
| Brassica rapa | A04 | 4 | CH_bra_62 | 4 | 8 | 0.0000000118733 |
| Brassica rapa | A09 | 4 | CH_bra_97 | 3 | 3 | 0.000000790707 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 4 | CH_bvu_46 | 4 | 9 | 0.000000000214495 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_54 | 4 | 6 | 0.0000000000127413 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 4 | CH_can_311 | 2 | 2 | 0.0000826105 |
| Corylus avellana | 10 | 4 | CH_cav_125 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa08 | 4 | CH_cfa_322 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_337 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr04 | 4 | CH_cla_36 | 3 | 4 | 0.0000000472183 |
| Cucumis melo | chr08 | 4 | CH_cme_180 | 2 | 2 | 0.0000667111 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_299 | 2 | 2 | 0.000438693 |
| Cucumis sativus L. | chr4 | 4 | CH_csa_190 | 2 | 2 | 0.0000834759 |
| Daucus carota | DCARv2_Chr6 | 4 | CH_dca_139 | 3 | 9 | 0.000000512433 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_86 | 3 | 4 | 0.0000000120811 |
| Eutrema salsugineum | scaffold_19 | 4 | CH_esa_76 | 3 | 3 | 0.0000000869853 |
| Glycine max | Gm03 | 4 | CH_gma_412 | 2 | 3 | 0.000341591 |
| Helianthus annuus | HanXRQChr10 | 4 | CH_han_131 | 4 | 5 | 0.0000000000605881 |
| Lupinus albus | Lalb_Chr25 | 4 | CH_lal_295 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr1 | 4 | CH_lja_88 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_47 | 5 | 6 | 3.14155e-16 |
| Malus domestica | Chr14 | 4 | CH_mdo_407 | 2 | 2 | 0.0000379212 |
| Medicago truncatula | chr1 | 4 | CH_mtr_263 | 3 | 4 | 0.0000000405134 |
| Olea europaea | chr2 | 4 | CH_oeu_20 | 4 | 5 | 0.0000000000114073 |
| Prunus persica | Pp07 | 4 | CH_ppe_64 | 5 | 8 | 0.0000000000000130067 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_105 | 3 | 5 | 0.000000163251 |
| Populus trichocarpa | Chr06 | 4 | CH_ptr_362 | 2 | 2 | 0.0001734 |
| Salix brachista | GWHAAZH00000006 | 4 | CH_sbr_276 | 2 | 3 | 0.000189036 |
| Simmondsia chinensis | GWHAASQ00000013 | 4 | CH_sci_217 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_198 | 5 | 5 | 0.00000000000000532293 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_147 | 3 | 4 | 0.00000002067 |
| Schrenkiella parvula | ch5-1 | 4 | CH_spa_190 | 2 | 2 | 0.000472404 |
| Selenicereus undatus | Scaffold_3410 | 4 | CH_sun_18 | 4 | 7 | 0.0000000000402851 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |