Functional clusters

Information

  • Type Gene Ontology
  • Description rRNA processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 3 CH_arhy_217 8 23 0.00000000176766
Carica papaya supercontig_62 3 CH_cpa_51 5 5 0.0000000336348
Magnolia biondii Chr16 3 CH_mbi_682 5 29 0.000969914
Papaver somniferum NW_020621936.1 3 CH_pso_566 4 7 0.000246818
Salix brachista GWHAAZH00000013 3 CH_sbr_307 4 7 0.000286517
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 4 CH_arhy_217 8 23 0.00000000176766
Carica papaya supercontig_62 4 CH_cpa_51 5 5 0.0000000336348
Magnolia biondii Chr16 4 CH_mbi_682 5 29 0.000969914
Papaver somniferum NW_020621936.1 4 CH_pso_566 4 7 0.000246818
Salix brachista GWHAAZH00000013 4 CH_sbr_307 4 7 0.000286517

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 10
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001