Functional clusters

Information

  • Type Gene Ontology
  • Description terpenoid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 3 CH_amhyb_21 6 8 0.0000000000119446
Aquilegia oxysepala CHR01 3 CH_aox_73 5 6 0.0000000863411
Capsicum annuum PGAv.1.6.scaffold135 3 CH_can_93 7 17 0.000000000208303
Chenopodium quinoa C_Quinoa_Scaffold_3966 3 CH_cqu_333 4 7 0.0000530867
Oryza sativa ssp. japonica chr04 3 CH_osa_269 4 8 0.0000429754
Quercus lobata 8 3 CH_qlo_759 7 56 0.0000753364
Salix brachista GWHAAZH00000018 3 CH_sbr_82 9 75 0.00000000256422
Solanum lycopersicum SL4.0ch06 3 CH_sly_370 5 24 0.0000675995
Selenicereus undatus Scaffold_19641 3 CH_sun_30 5 6 0.00000000574029
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 4 CH_amhyb_21 6 8 0.0000000000119446
Aquilegia oxysepala CHR01 4 CH_aox_73 5 6 0.0000000863411
Capsicum annuum PGAv.1.6.scaffold135 4 CH_can_93 7 17 0.000000000208303
Chenopodium quinoa C_Quinoa_Scaffold_3966 4 CH_cqu_333 4 7 0.0000530867
Oryza sativa ssp. japonica chr04 4 CH_osa_269 4 8 0.0000429754
Quercus lobata 8 4 CH_qlo_759 7 56 0.0000753364
Salix brachista GWHAAZH00000018 4 CH_sbr_82 9 75 0.00000000256422
Solanum lycopersicum SL4.0ch06 4 CH_sly_370 5 24 0.0000675995
Selenicereus undatus Scaffold_19641 4 CH_sun_30 5 6 0.00000000574029

Available child term results

Ontology identifier Description Number of clusters
GO:0006722 triterpenoid metabolic process 22
GO:0009686 gibberellin biosynthetic process 2
GO:0010028 xanthophyll cycle 2
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010683 tricyclic triterpenoid metabolic process 2
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016101 diterpenoid metabolic process 32
GO:0016102 diterpenoid biosynthetic process 82
GO:0016104 triterpenoid biosynthetic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016122 xanthophyll metabolic process 2
GO:0016123 xanthophyll biosynthetic process 2
GO:0016124 xanthophyll catabolic process 12
GO:0019742 pentacyclic triterpenoid metabolic process 12
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0033306 phytol metabolic process 74
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045338 farnesyl diphosphate metabolic process 6
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0046345 abscisic acid catabolic process 16
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0080003 thalianol metabolic process 6
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:1901601 strigolactone biosynthetic process 10
GO:1901811 beta-carotene catabolic process 10
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904964 positive regulation of phytol biosynthetic process 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001