Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of transcription elongation from RNA polymerase II promoter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_158 2 2 0.000481541
Aethionema arabicum LG-9 3 CH_aar_200 2 2 0.000273698
Actinidia chinensis Lachesis_group8 3 CH_ach_115 3 7 0.0000442665
Actinidia chinensis Lachesis_group12 3 CH_ach_86 3 4 0.00000506254
Aquilegia oxysepala CHR01 3 CH_aox_222 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 3 CH_arhy_156 5 15 0.0000000000143168
Cardamine hirsuta Chr8 3 CH_chi_270 2 2 0.000207361
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_134 3 4 0.00000024161
Fragaria x ananassa Fvb1-1 3 CH_fan_204 3 3 0.00000133531
Magnolia biondii Chr19 3 CH_mbi_56 5 6 0.0000000000000315452
Medicago truncatula chr7 3 CH_mtr_672 2 2 0.000410863
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_157 6 47 0.0000000000415401
Trochodendron aralioides group0 3 CH_tar_389 2 2 0.00036022
Vanilla planifolia CM028154.1 3 CH_vpl_34 4 4 0.000000000152497
Vanilla planifolia CM028150.1 3 CH_vpl_97 4 19 0.000000589442
Vitis vinifera chr13_random 3 CH_vvi_193 3 7 0.00000303639
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_158 2 2 0.000481541
Aethionema arabicum LG-9 4 CH_aar_200 2 2 0.000273698
Actinidia chinensis Lachesis_group8 4 CH_ach_115 3 7 0.0000442665
Actinidia chinensis Lachesis_group12 4 CH_ach_86 3 4 0.00000506254
Aquilegia oxysepala CHR01 4 CH_aox_222 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 4 CH_arhy_156 5 15 0.0000000000143168
Cardamine hirsuta Chr8 4 CH_chi_270 2 2 0.000207361
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_134 3 4 0.00000024161
Fragaria x ananassa Fvb1-1 4 CH_fan_204 3 3 0.00000133531
Magnolia biondii Chr19 4 CH_mbi_56 5 6 0.0000000000000315452
Medicago truncatula chr7 4 CH_mtr_672 2 2 0.000410863
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_157 6 47 0.0000000000415401
Trochodendron aralioides group0 4 CH_tar_389 2 2 0.00036022
Vanilla planifolia CM028154.1 4 CH_vpl_34 4 4 0.000000000152497
Vanilla planifolia CM028150.1 4 CH_vpl_97 4 19 0.000000589442
Vitis vinifera chr13_random 4 CH_vvi_193 3 7 0.00000303639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001