Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of transcription elongation from RNA polymerase II promoter
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Anthoceros agrestis | Sc2ySwM_228 | 3 | CH_aag_158 | 2 | 2 | 0.000481541 |
Aethionema arabicum | LG-9 | 3 | CH_aar_200 | 2 | 2 | 0.000273698 |
Actinidia chinensis | Lachesis_group8 | 3 | CH_ach_115 | 3 | 7 | 0.0000442665 |
Actinidia chinensis | Lachesis_group12 | 3 | CH_ach_86 | 3 | 4 | 0.00000506254 |
Aquilegia oxysepala | CHR01 | 3 | CH_aox_222 | 2 | 2 | 0.000240597 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 3 | CH_arhy_156 | 5 | 15 | 0.0000000000143168 |
Cardamine hirsuta | Chr8 | 3 | CH_chi_270 | 2 | 2 | 0.000207361 |
Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_134 | 3 | 4 | 0.00000024161 |
Fragaria x ananassa | Fvb1-1 | 3 | CH_fan_204 | 3 | 3 | 0.00000133531 |
Magnolia biondii | Chr19 | 3 | CH_mbi_56 | 5 | 6 | 0.0000000000000315452 |
Medicago truncatula | chr7 | 3 | CH_mtr_672 | 2 | 2 | 0.000410863 |
Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_157 | 6 | 47 | 0.0000000000415401 |
Trochodendron aralioides | group0 | 3 | CH_tar_389 | 2 | 2 | 0.00036022 |
Vanilla planifolia | CM028154.1 | 3 | CH_vpl_34 | 4 | 4 | 0.000000000152497 |
Vanilla planifolia | CM028150.1 | 3 | CH_vpl_97 | 4 | 19 | 0.000000589442 |
Vitis vinifera | chr13_random | 3 | CH_vvi_193 | 3 | 7 | 0.00000303639 |
Anthoceros agrestis | Sc2ySwM_228 | 4 | CH_aag_158 | 2 | 2 | 0.000481541 |
Aethionema arabicum | LG-9 | 4 | CH_aar_200 | 2 | 2 | 0.000273698 |
Actinidia chinensis | Lachesis_group8 | 4 | CH_ach_115 | 3 | 7 | 0.0000442665 |
Actinidia chinensis | Lachesis_group12 | 4 | CH_ach_86 | 3 | 4 | 0.00000506254 |
Aquilegia oxysepala | CHR01 | 4 | CH_aox_222 | 2 | 2 | 0.000240597 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 4 | CH_arhy_156 | 5 | 15 | 0.0000000000143168 |
Cardamine hirsuta | Chr8 | 4 | CH_chi_270 | 2 | 2 | 0.000207361 |
Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_134 | 3 | 4 | 0.00000024161 |
Fragaria x ananassa | Fvb1-1 | 4 | CH_fan_204 | 3 | 3 | 0.00000133531 |
Magnolia biondii | Chr19 | 4 | CH_mbi_56 | 5 | 6 | 0.0000000000000315452 |
Medicago truncatula | chr7 | 4 | CH_mtr_672 | 2 | 2 | 0.000410863 |
Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_157 | 6 | 47 | 0.0000000000415401 |
Trochodendron aralioides | group0 | 4 | CH_tar_389 | 2 | 2 | 0.00036022 |
Vanilla planifolia | CM028154.1 | 4 | CH_vpl_34 | 4 | 4 | 0.000000000152497 |
Vanilla planifolia | CM028150.1 | 4 | CH_vpl_97 | 4 | 19 | 0.000000589442 |
Vitis vinifera | chr13_random | 4 | CH_vvi_193 | 3 | 7 | 0.00000303639 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |