Functional clusters

Information

  • Type Gene Ontology
  • Description macromolecule biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr02 3 CH_mbi_378 21 67 0.0000292037
Magnolia biondii Chr02 4 CH_mbi_378 21 67 0.0000292037

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0000271 polysaccharide biosynthetic process 2
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0001172 transcription, RNA-templated 12
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001731 formation of translation preinitiation complex 14
GO:0002182 cytoplasmic translational elongation 20
GO:0006024 glycosaminoglycan biosynthetic process 2
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0006260 DNA replication 4
GO:0006261 DNA-dependent DNA replication 20
GO:0006264 mitochondrial DNA replication 8
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006269 DNA replication, synthesis of RNA primer 14
GO:0006270 DNA replication initiation 2
GO:0006273 lagging strand elongation 6
GO:0006275 regulation of DNA replication 8
GO:0006279 premeiotic DNA replication 6
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006351 transcription, DNA-templated 10
GO:0006352 DNA-templated transcription, initiation 14
GO:0006353 DNA-templated transcription, termination 36
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006360 transcription by RNA polymerase I 14
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006368 transcription elongation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 42
GO:0006383 transcription by RNA polymerase III 10
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0006393 termination of mitochondrial transcription 2
GO:0006412 translation 8
GO:0006413 translational initiation 8
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 8
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006499 N-terminal protein myristoylation 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0007004 telomere maintenance via telomerase 2
GO:0009250 glucan biosynthetic process 4
GO:0009299 mRNA transcription 4
GO:0009303 rRNA transcription 2
GO:0009969 xyloglucan biosynthetic process 4
GO:0010143 cutin biosynthetic process 2
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010556 regulation of macromolecule biosynthetic process 2
GO:0010581 regulation of starch biosynthetic process 4
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0016255 attachment of GPI anchor to protein 14
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0018345 protein palmitoylation 2
GO:0019252 starch biosynthetic process 2
GO:0030244 cellulose biosynthetic process 10
GO:0031297 replication fork processing 18
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032055 negative regulation of translation in response to stress 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032543 mitochondrial translation 8
GO:0032774 RNA biosynthetic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032875 regulation of DNA endoreduplication 10
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0034645 cellular macromolecule biosynthetic process 14
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035884 arabinan biosynthetic process 6
GO:0036066 protein O-linked fucosylation 14
GO:0042276 error-prone translesion synthesis 36
GO:0042793 plastid transcription 2
GO:0042794 plastid rRNA transcription 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045489 pectin biosynthetic process 10
GO:0045492 xylan biosynthetic process 18
GO:0045727 positive regulation of translation 18
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0048358 mucilage pectin biosynthetic process 4
GO:0051070 galactomannan biosynthetic process 8
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051973 positive regulation of telomerase activity 14
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0070829 heterochromatin maintenance 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071932 replication fork reversal 2
GO:0072344 rescue of stalled ribosome 12
GO:0080149 sucrose induced translational repression 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0097167 circadian regulation of translation 4
GO:0097659 nucleic acid-templated transcription 10
GO:1900030 regulation of pectin biosynthetic process 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901957 regulation of cutin biosynthetic process 12
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1902979 mitotic DNA replication termination 4
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000112 regulation of cellular macromolecule biosynthetic process 8
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 18
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001141 regulation of RNA biosynthetic process 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001