Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of RNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lonicera japonica GWHAAZE00000002 3 CH_lonja_473 10 19 0.000253062
Tripterygium wilfordii NC_052249.1 3 CH_twi_196 13 23 0.000049371
Lonicera japonica GWHAAZE00000002 4 CH_lonja_473 10 19 0.000253062
Tripterygium wilfordii NC_052249.1 4 CH_twi_196 13 23 0.000049371

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043484 regulation of RNA splicing 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051254 positive regulation of RNA metabolic process 4
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1903311 regulation of mRNA metabolic process 22
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000636 positive regulation of primary miRNA processing 6
GO:2001141 regulation of RNA biosynthetic process 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001