Functional clusters

Information

  • Type Gene Ontology
  • Description carboxylic acid catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Nelumbo nucifera chr2 3 CH_nnu_298 4 20 0.000545204
Papaver somniferum NC_039365.1 3 CH_pso_286 6 44 0.000000484631
Papaver somniferum NW_020627707.1 3 CH_pso_497 5 48 0.000125292
Nelumbo nucifera chr2 4 CH_nnu_298 4 20 0.000545204
Papaver somniferum NC_039365.1 4 CH_pso_286 6 44 0.000000484631
Papaver somniferum NW_020627707.1 4 CH_pso_497 5 48 0.000125292

Available child term results

Ontology identifier Description Number of clusters
GO:0001561 fatty acid alpha-oxidation 42
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 4
GO:0006569 tryptophan catabolic process 18
GO:0006574 valine catabolic process 4
GO:0006635 fatty acid beta-oxidation 6
GO:0010133 proline catabolic process to glutamate 4
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0019544 arginine catabolic process to glutamate 2
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 8
GO:0042183 formate catabolic process 2
GO:0042758 long-chain fatty acid catabolic process 2
GO:0042760 very long-chain fatty acid catabolic process 2
GO:0046244 salicylic acid catabolic process 42
GO:0046345 abscisic acid catabolic process 16
GO:0090410 malonate catabolic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001