Functional clusters

Information

  • Type Gene Ontology
  • Description posttranscriptional regulation of gene expression

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Gossypium hirsutum A06 3 CH_ghi_196 5 6 0.0000000199509
Gossypium hirsutum D06 3 CH_ghi_287 4 4 0.00000157905
Gossypium raimondii Chr10 3 CH_gra_32 8 10 0.00000000000000218504
Gossypium hirsutum A06 4 CH_ghi_196 5 6 0.0000000199509
Gossypium hirsutum D06 4 CH_ghi_287 4 4 0.00000157905
Gossypium raimondii Chr10 4 CH_gra_32 8 10 0.00000000000000218504

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006417 regulation of translation 8
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0030422 production of siRNA involved in RNA interference 2
GO:0031054 pre-miRNA processing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0035194 post-transcriptional gene silencing by RNA 2
GO:0035195 gene silencing by miRNA 4
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0045727 positive regulation of translation 18
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0048255 mRNA stabilization 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0072344 rescue of stalled ribosome 12
GO:0080149 sucrose induced translational repression 2
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:0097167 circadian regulation of translation 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 22
GO:2000636 positive regulation of primary miRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001