Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of transcription, DNA-templated

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 3 CH_amhyb_34 10 10 0.00000000465606
Amborella trichopoda AmTr_v1.0_scaffold00061 3 CH_atr_230 6 6 0.000151373
Brassica carinata ChrC05 3 CH_bca_393 10 13 0.00000506773
Capsicum annuum PGAv.1.6.scaffold371 3 CH_can_227 9 11 0.000004766
Cicer arietinum L. Ca_LG3_v3 3 CH_car_83 14 34 0.0000294869
Corylus avellana 2 3 CH_cav_159 11 17 0.00000314511
Coffea canephora chr8 3 CH_ccan_165 5 9 0.000010325
Coffea canephora chr7 3 CH_ccan_376 6 40 0.000593393
Carica papaya supercontig_235 3 CH_cpa_244 9 16 0.00038643
Carica papaya supercontig_80 3 CH_cpa_274 7 9 0.000601484
Eucalyptus grandis Chr07 3 CH_egr_332 17 32 0.000000000778745
Lonicera japonica GWHAAZE00000002 3 CH_lonja_469 19 79 0.000227151
Punica granatum NC_045130.1 3 CH_pgr_228 16 41 0.0000210765
Papaver somniferum NC_039362.1 3 CH_pso_478 8 12 0.0000862386
Quercus lobata 9 3 CH_qlo_252 14 18 0.0000000000688517
Quercus lobata 4 3 CH_qlo_751 8 10 0.0000681965
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_143 17 35 0.00000000000974179
Sequoiadendron giganteum chr1 3 CH_sgi_1159 7 9 0.000161605
Selaginella moellendorffii scaffold_111 3 CH_smo_183 5 5 0.000810074
Trochodendron aralioides group5 3 CH_tar_254 9 11 0.0000433741
Zea mays 7 3 CH_zma_314 8 9 0.000572018
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 4 CH_amhyb_34 10 10 0.00000000465606
Amborella trichopoda AmTr_v1.0_scaffold00061 4 CH_atr_230 6 6 0.000151373
Brassica carinata ChrC05 4 CH_bca_393 10 13 0.00000506773
Capsicum annuum PGAv.1.6.scaffold371 4 CH_can_227 9 11 0.000004766
Cicer arietinum L. Ca_LG3_v3 4 CH_car_83 14 34 0.0000294869
Corylus avellana 2 4 CH_cav_159 11 17 0.00000314511
Coffea canephora chr8 4 CH_ccan_165 5 9 0.000010325
Coffea canephora chr7 4 CH_ccan_376 6 40 0.000593393
Carica papaya supercontig_235 4 CH_cpa_244 9 16 0.00038643
Carica papaya supercontig_80 4 CH_cpa_274 7 9 0.000601484
Eucalyptus grandis Chr07 4 CH_egr_332 17 32 0.000000000778745
Lonicera japonica GWHAAZE00000002 4 CH_lonja_469 19 79 0.000227151
Punica granatum NC_045130.1 4 CH_pgr_228 16 41 0.0000210765
Papaver somniferum NC_039362.1 4 CH_pso_478 8 12 0.0000862386
Quercus lobata 9 4 CH_qlo_252 14 18 0.0000000000688517
Quercus lobata 4 4 CH_qlo_751 8 10 0.0000681965
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_143 17 35 0.00000000000974179
Sequoiadendron giganteum chr1 4 CH_sgi_1159 7 9 0.000161605
Selaginella moellendorffii scaffold_111 4 CH_smo_183 5 5 0.000810074
Trochodendron aralioides group5 4 CH_tar_254 9 11 0.0000433741
Zea mays 7 4 CH_zma_314 8 9 0.000572018

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 48

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001