Functional clusters

Information

  • Type Gene Ontology
  • Description fatty acid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 3 CH_acertr_5 13 13 4.36724e-27
Acer truncatum chr4 3 CH_acertr_57 6 6 0.000000000202594
Amborella trichopoda AmTr_v1.0_scaffold00014 3 CH_atr_161 4 4 0.000010399
Amborella trichopoda AmTr_v1.0_scaffold00129 3 CH_atr_18 13 30 5.28061e-19
Coffea canephora chr3 3 CH_ccan_248 4 40 0.000117062
Citrus clementina scaffold_9 3 CH_ccl_107 6 7 0.000000000994851
Carya illinoinensis Chr13 3 CH_cil_296 4 5 0.0000183165
Carya illinoinensis Chr03 3 CH_cil_297 4 4 0.0000183165
Carica papaya supercontig_1 3 CH_cpa_313 3 3 0.000991693
Erigeron canadensis Conyza_canadensis_scaffold:4 3 CH_eca_119 5 6 0.0000000875375
Eucalyptus grandis Chr08 3 CH_egr_271 7 9 0.000000000015677
Erythranthe guttata scaffold_7 3 CH_egut_158 5 5 0.0000000474792
Malus domestica Chr07 3 CH_mdo_387 5 12 0.0000320437
Manihot esculenta Chromosome02 3 CH_mes_182 5 6 0.000000356537
Nicotiana tabacum Nitab4.5_0000187 3 CH_nta_51 4 4 0.00000303835
Papaver somniferum NC_039365.1 3 CH_pso_439 7 57 0.0000447051
Papaver somniferum NC_039359.1 3 CH_pso_449 5 15 0.0000639977
Populus trichocarpa Chr10 3 CH_ptr_72 8 9 0.0000000000000770563
Rhododendron simsii chr01 3 CH_rsi_214 5 6 0.000000142103
Salix brachista GWHAAZH00000010 3 CH_sbr_53 7 8 0.00000000000544321
Solanum lycopersicum SL4.0ch06 3 CH_sly_292 4 4 0.000016358
Trochodendron aralioides group16 3 CH_tar_61 7 10 0.000000000253869
Theobroma cacao Chromosome_4 3 CH_tca_54 7 8 0.00000000000220711
Acer truncatum chr4 4 CH_acertr_5 13 13 4.36724e-27
Acer truncatum chr4 4 CH_acertr_57 6 6 0.000000000202594
Amborella trichopoda AmTr_v1.0_scaffold00014 4 CH_atr_161 4 4 0.000010399
Amborella trichopoda AmTr_v1.0_scaffold00129 4 CH_atr_18 13 30 5.28061e-19
Coffea canephora chr3 4 CH_ccan_248 4 40 0.000117062
Citrus clementina scaffold_9 4 CH_ccl_107 6 7 0.000000000994851
Carya illinoinensis Chr13 4 CH_cil_296 4 5 0.0000183165
Carya illinoinensis Chr03 4 CH_cil_297 4 4 0.0000183165
Carica papaya supercontig_1 4 CH_cpa_313 3 3 0.000991693
Erigeron canadensis Conyza_canadensis_scaffold:4 4 CH_eca_119 5 6 0.0000000875375
Eucalyptus grandis Chr08 4 CH_egr_271 7 9 0.000000000015677
Erythranthe guttata scaffold_7 4 CH_egut_158 5 5 0.0000000474792
Malus domestica Chr07 4 CH_mdo_387 5 12 0.0000320437
Manihot esculenta Chromosome02 4 CH_mes_182 5 6 0.000000356537
Nicotiana tabacum Nitab4.5_0000187 4 CH_nta_51 4 4 0.00000303835
Papaver somniferum NC_039365.1 4 CH_pso_439 7 57 0.0000447051
Papaver somniferum NC_039359.1 4 CH_pso_449 5 15 0.0000639977
Populus trichocarpa Chr10 4 CH_ptr_72 8 9 0.0000000000000770563
Rhododendron simsii chr01 4 CH_rsi_214 5 6 0.000000142103
Salix brachista GWHAAZH00000010 4 CH_sbr_53 7 8 0.00000000000544321
Solanum lycopersicum SL4.0ch06 4 CH_sly_292 4 4 0.000016358
Trochodendron aralioides group16 4 CH_tar_61 7 10 0.000000000253869
Theobroma cacao Chromosome_4 4 CH_tca_54 7 8 0.00000000000220711

Available child term results

Ontology identifier Description Number of clusters
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0030497 fatty acid elongation 6
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001