Functional clusters

Information

  • Type Gene Ontology
  • Description putrescine biosynthetic process from arginine, using agmatinase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 3 CH_acertr_353 2 3 0.000211484
Corchorus olitorius AWUE01018676.1 3 CH_col_104 2 3 0.000876168
Capsella rubella scaffold_6 3 CH_cru_258 2 3 0.000219338
Lotus japonicus chr3 3 CH_lja_30 4 4 0.00000000000109705
Medicago truncatula chr4 3 CH_mtr_538 2 3 0.000123256
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_574 2 3 0.000119593
Simmondsia chinensis GWHAASQ00000026 3 CH_sci_43 3 4 0.0000000434956
Solanum lycopersicum SL4.0ch01 3 CH_sly_331 2 2 0.0000586941
Solanum pennellii Spenn-ch01 3 CH_spe_271 2 2 0.000044479
Acer truncatum chr5 4 CH_acertr_353 2 3 0.000211484
Corchorus olitorius AWUE01018676.1 4 CH_col_104 2 3 0.000876168
Capsella rubella scaffold_6 4 CH_cru_258 2 3 0.000219338
Lotus japonicus chr3 4 CH_lja_30 4 4 0.00000000000109705
Medicago truncatula chr4 4 CH_mtr_538 2 3 0.000123256
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_574 2 3 0.000119593
Simmondsia chinensis GWHAASQ00000026 4 CH_sci_43 3 4 0.0000000434956
Solanum lycopersicum SL4.0ch01 4 CH_sly_331 2 2 0.0000586941
Solanum pennellii Spenn-ch01 4 CH_spe_271 2 2 0.000044479

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001