Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of DNA-templated transcription, elongation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00129 3 CH_atr_176 3 5 0.0000430389
Amborella trichopoda AmTr_v1.0_scaffold00002 3 CH_atr_222 3 6 0.0000860436
Brassica rapa A09 3 CH_bra_110 3 3 0.00000188
Malus domestica Chr10 3 CH_mdo_575 3 8 0.000313525
Simmondsia chinensis GWHAASQ00000009 3 CH_sci_116 3 4 0.0000124358
Sequoiadendron giganteum chr7 3 CH_sgi_856 3 4 0.0000116158
Theobroma cacao Chromosome_7 3 CH_tca_171 5 36 0.000000351331
Amborella trichopoda AmTr_v1.0_scaffold00129 4 CH_atr_176 3 5 0.0000430389
Amborella trichopoda AmTr_v1.0_scaffold00002 4 CH_atr_222 3 6 0.0000860436
Brassica rapa A09 4 CH_bra_110 3 3 0.00000188
Malus domestica Chr10 4 CH_mdo_575 3 8 0.000313525
Simmondsia chinensis GWHAASQ00000009 4 CH_sci_116 3 4 0.0000124358
Sequoiadendron giganteum chr7 4 CH_sgi_856 3 4 0.0000116158
Theobroma cacao Chromosome_7 4 CH_tca_171 5 36 0.000000351331

Available child term results

Ontology identifier Description Number of clusters
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001