Functional clusters

Information

  • Type Gene Ontology
  • Description alpha-amino acid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Solanum pennellii Spenn-ch10 3 CH_spe_465 5 29 0.000872808
Solanum pennellii Spenn-ch10 4 CH_spe_465 5 29 0.000872808

Available child term results

Ontology identifier Description Number of clusters
GO:0000162 tryptophan biosynthetic process 2
GO:0006529 asparagine biosynthetic process 14
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006537 glutamate biosynthetic process 10
GO:0006542 glutamine biosynthetic process 8
GO:0006571 tyrosine biosynthetic process 4
GO:0006592 ornithine biosynthetic process 12
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0019264 glycine biosynthetic process from serine 14
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0070179 D-serine biosynthetic process 40
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001