Functional clusters

Information

  • Type Gene Ontology
  • Description valyl-tRNA aminoacylation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 3 CH_aag_53 3 3 0.000000193242
Actinidia chinensis Lachesis_group8 3 CH_ach_54 3 3 0.000000371811
Aquilegia oxysepala CHR02 3 CH_aox_23 4 4 0.0000000000541685
Corylus avellana 5 3 CH_cav_370 2 2 0.000460017
Chara braunii BFEA01000118 3 CH_cbr_170 2 3 0.000647303
Cardamine hirsuta Chr1 3 CH_chi_370 2 2 0.000691204
Carya illinoinensis Chr09 3 CH_cil_400 2 2 0.000185948
Chenopodium quinoa C_Quinoa_Scaffold_1843 3 CH_cqu_515 2 2 0.000710732
Fragaria x ananassa Fvb7-2 3 CH_fan_295 3 8 0.0000160979
Glycine max Gm17 3 CH_gma_153 3 3 0.0000000756348
Magnolia biondii Chr18 3 CH_mbi_176 3 3 0.0000000353808
Malus domestica Chr17 3 CH_mdo_321 4 34 0.00000539963
Petunia axillaris Peaxi162Scf00057 3 CH_pax_90 3 3 0.000000415808
Punica granatum NC_045127.1 3 CH_pgr_206 4 76 0.00000809183
Prunus persica Pp03 3 CH_ppe_422 2 2 0.000447577
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_123 5 7 0.00000000000119428
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_346 3 3 0.00000108468
Sechium edule LG05 3 CH_sed_200 2 2 0.000214026
Solanum lycopersicum SL4.0ch12 3 CH_sly_413 2 2 0.000176082
Selenicereus undatus Scaffold_33673 3 CH_sun_215 2 3 0.000653935
Trochodendron aralioides group15 3 CH_tar_114 3 3 0.0000000540676
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_281 2 2 0.000278772
Vigna mungo CM024077.1 3 CH_vmu_233 2 2 0.000193842
Vanilla planifolia CM028150.1 3 CH_vpl_109 3 6 0.00000163744
Vanilla planifolia CM028150.1 3 CH_vpl_349 2 2 0.00073888
Vitis vinifera chr14 3 CH_vvi_411 2 2 0.00076063
Zea mays 10 3 CH_zma_295 2 2 0.000511313
Anthoceros agrestis Sc2ySwM_117 4 CH_aag_53 3 3 0.000000193242
Actinidia chinensis Lachesis_group8 4 CH_ach_54 3 3 0.000000371811
Aquilegia oxysepala CHR02 4 CH_aox_23 4 4 0.0000000000541685
Corylus avellana 5 4 CH_cav_370 2 2 0.000460017
Chara braunii BFEA01000118 4 CH_cbr_170 2 3 0.000647303
Cardamine hirsuta Chr1 4 CH_chi_370 2 2 0.000691204
Carya illinoinensis Chr09 4 CH_cil_400 2 2 0.000185948
Chenopodium quinoa C_Quinoa_Scaffold_1843 4 CH_cqu_515 2 2 0.000710732
Fragaria x ananassa Fvb7-2 4 CH_fan_295 3 8 0.0000160979
Glycine max Gm17 4 CH_gma_153 3 3 0.0000000756348
Magnolia biondii Chr18 4 CH_mbi_176 3 3 0.0000000353808
Malus domestica Chr17 4 CH_mdo_321 4 34 0.00000539963
Petunia axillaris Peaxi162Scf00057 4 CH_pax_90 3 3 0.000000415808
Punica granatum NC_045127.1 4 CH_pgr_206 4 76 0.00000809183
Prunus persica Pp03 4 CH_ppe_422 2 2 0.000447577
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_123 5 7 0.00000000000119428
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_346 3 3 0.00000108468
Sechium edule LG05 4 CH_sed_200 2 2 0.000214026
Solanum lycopersicum SL4.0ch12 4 CH_sly_413 2 2 0.000176082
Selenicereus undatus Scaffold_33673 4 CH_sun_215 2 3 0.000653935
Trochodendron aralioides group15 4 CH_tar_114 3 3 0.0000000540676
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_281 2 2 0.000278772
Vigna mungo CM024077.1 4 CH_vmu_233 2 2 0.000193842
Vanilla planifolia CM028150.1 4 CH_vpl_109 3 6 0.00000163744
Vanilla planifolia CM028150.1 4 CH_vpl_349 2 2 0.00073888
Vitis vinifera chr14 4 CH_vvi_411 2 2 0.00076063
Zea mays 10 4 CH_zma_295 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001