Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of ubiquitin protein ligase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 3 | CH_aag_179 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC02 | 3 | CH_bca_721 | 3 | 8 | 0.000229394 |
| Brassica carinata | ChrB07 | 3 | CH_bca_90 | 5 | 9 | 0.0000000000548501 |
| Brassica napus | C04 | 3 | CH_bna_23 | 8 | 30 | 4.21369e-17 |
| Brassica oleracea | C4 | 3 | CH_bol_94 | 4 | 9 | 0.0000000313889 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_47 | 5 | 5 | 0.00000000000146709 |
| Gossypium hirsutum | A11 | 3 | CH_ghi_190 | 4 | 7 | 0.0000000119571 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_171 | 3 | 7 | 0.00003481 |
| Olea europaea | chr19 | 3 | CH_oeu_80 | 4 | 32 | 0.00000057286 |
| Sapria himalayana | scaffold79_1975033 | 3 | CH_shi_239 | 2 | 2 | 0.000571804 |
| Sapria himalayana | scaffold58_3239794 | 3 | CH_shi_240 | 2 | 2 | 0.000571804 |
| Selenicereus undatus | Scaffold_33677 | 3 | CH_sun_63 | 3 | 5 | 0.00000443386 |
| Vanilla planifolia | CM028156.1 | 3 | CH_vpl_13 | 7 | 24 | 5.31291e-16 |
| Vitis vinifera | chr5 | 3 | CH_vvi_295 | 3 | 9 | 0.000120095 |
| Anthoceros agrestis | Sc2ySwM_368 | 4 | CH_aag_179 | 2 | 2 | 0.000802568 |
| Brassica carinata | ChrC02 | 4 | CH_bca_721 | 3 | 8 | 0.000229394 |
| Brassica carinata | ChrB07 | 4 | CH_bca_90 | 5 | 9 | 0.0000000000548501 |
| Brassica napus | C04 | 4 | CH_bna_23 | 8 | 30 | 4.21369e-17 |
| Brassica oleracea | C4 | 4 | CH_bol_94 | 4 | 9 | 0.0000000313889 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_47 | 5 | 5 | 0.00000000000146709 |
| Gossypium hirsutum | A11 | 4 | CH_ghi_190 | 4 | 7 | 0.0000000119571 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_171 | 3 | 7 | 0.00003481 |
| Olea europaea | chr19 | 4 | CH_oeu_80 | 4 | 32 | 0.00000057286 |
| Sapria himalayana | scaffold79_1975033 | 4 | CH_shi_239 | 2 | 2 | 0.000571804 |
| Sapria himalayana | scaffold58_3239794 | 4 | CH_shi_240 | 2 | 2 | 0.000571804 |
| Selenicereus undatus | Scaffold_33677 | 4 | CH_sun_63 | 3 | 5 | 0.00000443386 |
| Vanilla planifolia | CM028156.1 | 4 | CH_vpl_13 | 7 | 24 | 5.31291e-16 |
| Vitis vinifera | chr5 | 4 | CH_vvi_295 | 3 | 9 | 0.000120095 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |