Functional clusters

Information

  • Type Gene Ontology
  • Description (-)-pinoresinol biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 3 CH_aar_165 2 2 0.0000912326
Acer truncatum chr9 3 CH_acertr_312 2 2 0.000070497
Aquilegia oxysepala CHR05 3 CH_aox_68 3 3 0.0000000385927
Amborella trichopoda AmTr_v1.0_scaffold00004 3 CH_atr_216 2 2 0.0000794407
Brassica carinata ChrC04 3 CH_bca_557 2 2 0.0000641293
Camellia sinensis var. sinensis Chr14 3 CH_camsi_687 2 2 0.000275128
Cannabis sativa NC_044374.1 3 CH_cansat_264 2 3 0.000196986
Citrus clementina scaffold_3 3 CH_ccl_133 3 3 0.0000000100941
Carpinus fangiana Cfa05 3 CH_cfa_48 4 6 0.0000000000195485
Carya illinoinensis Chr11 3 CH_cil_414 2 2 0.000185948
Citrullus lanatus CG_Chr07 3 CH_cla_56 3 9 0.000000991365
Cucumis sativus L. chr4 3 CH_csa_90 3 4 0.0000000418094
Durio zibethinus NW_019168381.1 3 CH_dzi_248 2 2 0.000139047
Fragaria vesca Fvb5 3 CH_fve_256 2 2 0.0000589102
Glycine max Gm08 3 CH_gma_335 2 2 0.000113867
Gossypium raimondii Chr03 3 CH_gra_260 2 2 0.000160832
Lupinus albus Lalb_Chr16 3 CH_lal_354 2 3 0.000472321
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_335 2 2 0.0000514007
Medicago truncatula chr8 3 CH_mtr_489 2 2 0.0000410863
Oryza sativa ssp. japonica chr07 3 CH_osa_145 4 52 0.000000119492
Punica granatum NC_045127.1 3 CH_pgr_163 3 6 0.000000675534
Papaver somniferum NW_020648415.1 3 CH_pso_1 15 16 1.77518e-55
Phaseolus vulgaris Chr02 3 CH_pvu_294 2 2 0.000220418
Rhododendron simsii chr07 3 CH_rsi_355 2 2 0.0000645307
Salvia bowleyana GWHASIU00000001 3 CH_sbo_244 3 19 0.00000300781
Salix brachista GWHAAZH00000003 3 CH_sbr_109 3 3 0.0000000238253
Simmondsia chinensis GWHAASQ00000006 3 CH_sci_162 2 2 0.0000851426
Sechium edule LG13 3 CH_sed_197 2 3 0.000214018
Solanum lycopersicum SL4.0ch08 3 CH_sly_355 2 2 0.0000586941
Solanum pennellii Spenn-ch08 3 CH_spe_279 2 2 0.000044479
Trochodendron aralioides group15 3 CH_tar_352 2 2 0.00018011
Theobroma cacao Chromosome_3 3 CH_tca_279 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG3 3 CH_tpr_57 3 3 0.00000000859546
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_97 3 4 0.000000051809
Vigna mungo CM024069.1 3 CH_vmu_240 2 2 0.000193842
Aethionema arabicum LG-6 4 CH_aar_165 2 2 0.0000912326
Acer truncatum chr9 4 CH_acertr_312 2 2 0.000070497
Aquilegia oxysepala CHR05 4 CH_aox_68 3 3 0.0000000385927
Amborella trichopoda AmTr_v1.0_scaffold00004 4 CH_atr_216 2 2 0.0000794407
Brassica carinata ChrC04 4 CH_bca_557 2 2 0.0000641293
Camellia sinensis var. sinensis Chr14 4 CH_camsi_687 2 2 0.000275128
Cannabis sativa NC_044374.1 4 CH_cansat_264 2 3 0.000196986
Citrus clementina scaffold_3 4 CH_ccl_133 3 3 0.0000000100941
Carpinus fangiana Cfa05 4 CH_cfa_48 4 6 0.0000000000195485
Carya illinoinensis Chr11 4 CH_cil_414 2 2 0.000185948
Citrullus lanatus CG_Chr07 4 CH_cla_56 3 9 0.000000991365
Cucumis sativus L. chr4 4 CH_csa_90 3 4 0.0000000418094
Durio zibethinus NW_019168381.1 4 CH_dzi_248 2 2 0.000139047
Fragaria vesca Fvb5 4 CH_fve_256 2 2 0.0000589102
Glycine max Gm08 4 CH_gma_335 2 2 0.000113867
Gossypium raimondii Chr03 4 CH_gra_260 2 2 0.000160832
Lupinus albus Lalb_Chr16 4 CH_lal_354 2 3 0.000472321
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_335 2 2 0.0000514007
Medicago truncatula chr8 4 CH_mtr_489 2 2 0.0000410863
Oryza sativa ssp. japonica chr07 4 CH_osa_145 4 52 0.000000119492
Punica granatum NC_045127.1 4 CH_pgr_163 3 6 0.000000675534
Papaver somniferum NW_020648415.1 4 CH_pso_1 15 16 1.77518e-55
Phaseolus vulgaris Chr02 4 CH_pvu_294 2 2 0.000220418
Rhododendron simsii chr07 4 CH_rsi_355 2 2 0.0000645307
Salvia bowleyana GWHASIU00000001 4 CH_sbo_244 3 19 0.00000300781
Salix brachista GWHAAZH00000003 4 CH_sbr_109 3 3 0.0000000238253
Simmondsia chinensis GWHAASQ00000006 4 CH_sci_162 2 2 0.0000851426
Sechium edule LG13 4 CH_sed_197 2 3 0.000214018
Solanum lycopersicum SL4.0ch08 4 CH_sly_355 2 2 0.0000586941
Solanum pennellii Spenn-ch08 4 CH_spe_279 2 2 0.000044479
Trochodendron aralioides group15 4 CH_tar_352 2 2 0.00018011
Theobroma cacao Chromosome_3 4 CH_tca_279 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG3 4 CH_tpr_57 3 3 0.00000000859546
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_97 3 4 0.000000051809
Vigna mungo CM024069.1 4 CH_vmu_240 2 2 0.000193842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001