Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin-dependent protein catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 3 | CH_aag_144 | 5 | 15 | 0.000298722 |
| Aethionema arabicum | LG-3 | 3 | CH_aar_253 | 4 | 5 | 0.000660733 |
| Aethionema arabicum | LG-9 | 3 | CH_aar_6 | 18 | 23 | 3.86464e-29 |
| Acer truncatum | chr10 | 3 | CH_acertr_153 | 6 | 10 | 0.000000247365 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_120 | 5 | 5 | 0.00000130444 |
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_173 | 7 | 23 | 0.0000197628 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_195 | 4 | 6 | 0.000598694 |
| Aquilegia oxysepala | CHR03 | 3 | CH_aox_30 | 7 | 8 | 0.000000000306458 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 3 | CH_arhy_120 | 10 | 19 | 0.000000000000344004 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_80 | 10 | 11 | 4.2768e-17 |
| Brassica carinata | ChrC09 | 3 | CH_bca_585 | 5 | 9 | 0.0000818941 |
| Brassica carinata | ChrC04 | 3 | CH_bca_601 | 8 | 53 | 0.0000929373 |
| Brassica carinata | ChrB01 | 3 | CH_bca_808 | 8 | 64 | 0.000438373 |
| Brassica napus | C08 | 3 | CH_bna_481 | 5 | 10 | 0.000142054 |
| Cannabis sativa | NC_044374.1 | 3 | CH_cansat_361 | 4 | 8 | 0.000847866 |
| Corylus avellana | 2 | 3 | CH_cav_33 | 10 | 19 | 0.000000000000147797 |
| Chara braunii | BFEA01000126 | 3 | CH_cbr_150 | 4 | 8 | 0.000279225 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_112 | 6 | 6 | 0.00000000205973 |
| Ceratophyllum demersum | 1 | 3 | CH_cde_51 | 5 | 5 | 0.000000817986 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_51 | 7 | 8 | 0.0000000000365077 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_168 | 6 | 12 | 0.00000503714 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_352 | 4 | 5 | 0.000493815 |
| Carya illinoinensis | Chr10 | 3 | CH_cil_205 | 6 | 9 | 0.000000177972 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 3 | CH_cqu_114 | 6 | 6 | 0.00000000549605 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 3 | CH_cqu_192 | 8 | 28 | 0.000000743983 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3541 | 3 | CH_cqu_90 | 7 | 8 | 0.000000000307503 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_167 | 6 | 10 | 0.00000475296 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_19 | 11 | 13 | 1.42012e-16 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_9 | 15 | 23 | 6.55752e-21 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_158 | 4 | 4 | 0.0000245102 |
| Davidia involucrata | GWHABJS00000004 | 3 | CH_din_303 | 4 | 4 | 0.000197719 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 3 | CH_eca_52 | 7 | 9 | 0.000000000141373 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_317 | 7 | 10 | 0.000000000437764 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_507 | 5 | 6 | 0.000000827846 |
| Eucalyptus grandis | Chr09 | 3 | CH_egr_634 | 4 | 4 | 0.0000266013 |
| Erythranthe guttata | scaffold_2 | 3 | CH_egut_244 | 5 | 8 | 0.0000279616 |
| Eutrema salsugineum | scaffold_7 | 3 | CH_esa_24 | 9 | 11 | 0.000000000000301102 |
| Eutrema salsugineum | scaffold_4 | 3 | CH_esa_254 | 4 | 5 | 0.00068403 |
| Eutrema salsugineum | scaffold_3 | 3 | CH_esa_255 | 4 | 5 | 0.00068403 |
| Eutrema salsugineum | scaffold_14 | 3 | CH_esa_34 | 9 | 18 | 0.000000000252617 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_318 | 4 | 5 | 0.000244942 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_68 | 8 | 14 | 0.000000000192271 |
| Helianthus annuus | HanXRQChr14 | 3 | CH_han_120 | 13 | 75 | 0.0000000000215142 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_297 | 6 | 18 | 0.0000186418 |
| Medicago truncatula | chr3 | 3 | CH_mtr_114 | 14 | 74 | 0.00000000000231079 |
| Medicago truncatula | chr7 | 3 | CH_mtr_139 | 10 | 26 | 0.000000000023899 |
| Medicago truncatula | chr3 | 3 | CH_mtr_186 | 7 | 9 | 0.000000000719933 |
| Medicago truncatula | chr5 | 3 | CH_mtr_345 | 8 | 31 | 0.00000087907 |
| Medicago truncatula | chr2 | 3 | CH_mtr_421 | 6 | 14 | 0.0000092484 |
| Medicago truncatula | chr4 | 3 | CH_mtr_69 | 9 | 10 | 0.0000000000000078697 |
| Nicotiana tabacum | Nitab4.5_0000096 | 3 | CH_nta_146 | 4 | 7 | 0.000706205 |
| Nicotiana tabacum | Nitab4.5_0001770 | 3 | CH_nta_65 | 4 | 4 | 0.0000204568 |
| Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_75 | 9 | 16 | 0.000000000106625 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_291 | 5 | 13 | 0.000170805 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_31 | 9 | 15 | 0.00000000000042527 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_110 | 8 | 11 | 0.00000000000541117 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_116 | 8 | 12 | 0.0000000000161623 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_12 | 15 | 19 | 8.44819e-27 |
| Papaver somniferum | NW_020649859.1 | 3 | CH_pso_272 | 5 | 5 | 0.000000274735 |
| Papaver somniferum | NW_020618823.1 | 3 | CH_pso_495 | 5 | 11 | 0.000123806 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_496 | 5 | 11 | 0.000123806 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_573 | 4 | 5 | 0.000275408 |
| Quercus lobata | 5 | 3 | CH_qlo_250 | 7 | 8 | 0.0000000000587669 |
| Quercus lobata | 11 | 3 | CH_qlo_665 | 6 | 18 | 0.0000230813 |
| Quercus lobata | 11 | 3 | CH_qlo_855 | 8 | 67 | 0.000200309 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_86 | 14 | 72 | 0.00000000000000543164 |
| Rhododendron simsii | chr08 | 3 | CH_rsi_306 | 5 | 8 | 0.0000126137 |
| Salvia bowleyana | GWHASIU00000004 | 3 | CH_sbo_169 | 5 | 5 | 0.0000000380257 |
| Salvia bowleyana | GWHASIU00000003 | 3 | CH_sbo_427 | 6 | 37 | 0.000303562 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_299 | 7 | 8 | 0.0000000000037433 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_901 | 5 | 12 | 0.0000260102 |
| Solanum tuberosum | ST4.03ch08 | 3 | CH_stu_480 | 4 | 4 | 0.00015436 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 3 | CH_tpr_149 | 6 | 13 | 0.00000852683 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 3 | CH_tpr_235 | 4 | 4 | 0.0000911749 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_74 | 6 | 7 | 0.0000000361624 |
| Vitis vinifera | chr15 | 3 | CH_vvi_240 | 4 | 4 | 0.0000267508 |
| Vitis vinifera | chr3 | 3 | CH_vvi_368 | 6 | 30 | 0.000434178 |
| Anthoceros agrestis | Sc2ySwM_344 | 4 | CH_aag_144 | 5 | 15 | 0.000298722 |
| Aethionema arabicum | LG-3 | 4 | CH_aar_253 | 4 | 5 | 0.000660733 |
| Aethionema arabicum | LG-9 | 4 | CH_aar_6 | 18 | 23 | 3.86464e-29 |
| Acer truncatum | chr10 | 4 | CH_acertr_153 | 6 | 10 | 0.000000247365 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_120 | 5 | 5 | 0.00000130444 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_173 | 7 | 23 | 0.0000197628 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_195 | 4 | 6 | 0.000598694 |
| Aquilegia oxysepala | CHR03 | 4 | CH_aox_30 | 7 | 8 | 0.000000000306458 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 4 | CH_arhy_120 | 10 | 19 | 0.000000000000344004 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_80 | 10 | 11 | 4.2768e-17 |
| Brassica carinata | ChrC09 | 4 | CH_bca_585 | 5 | 9 | 0.0000818941 |
| Brassica carinata | ChrC04 | 4 | CH_bca_601 | 8 | 53 | 0.0000929373 |
| Brassica carinata | ChrB01 | 4 | CH_bca_808 | 8 | 64 | 0.000438373 |
| Brassica napus | C08 | 4 | CH_bna_481 | 5 | 10 | 0.000142054 |
| Cannabis sativa | NC_044374.1 | 4 | CH_cansat_361 | 4 | 8 | 0.000847866 |
| Corylus avellana | 2 | 4 | CH_cav_33 | 10 | 19 | 0.000000000000147797 |
| Chara braunii | BFEA01000126 | 4 | CH_cbr_150 | 4 | 8 | 0.000279225 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_112 | 6 | 6 | 0.00000000205973 |
| Ceratophyllum demersum | 1 | 4 | CH_cde_51 | 5 | 5 | 0.000000817986 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_51 | 7 | 8 | 0.0000000000365077 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_168 | 6 | 12 | 0.00000503714 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_352 | 4 | 5 | 0.000493815 |
| Carya illinoinensis | Chr10 | 4 | CH_cil_205 | 6 | 9 | 0.000000177972 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 4 | CH_cqu_114 | 6 | 6 | 0.00000000549605 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 4 | CH_cqu_192 | 8 | 28 | 0.000000743983 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3541 | 4 | CH_cqu_90 | 7 | 8 | 0.000000000307503 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_167 | 6 | 10 | 0.00000475296 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_19 | 11 | 13 | 1.42012e-16 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_9 | 15 | 23 | 6.55752e-21 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_158 | 4 | 4 | 0.0000245102 |
| Davidia involucrata | GWHABJS00000004 | 4 | CH_din_303 | 4 | 4 | 0.000197719 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 4 | CH_eca_52 | 7 | 9 | 0.000000000141373 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_317 | 7 | 10 | 0.000000000437764 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_507 | 5 | 6 | 0.000000827846 |
| Eucalyptus grandis | Chr09 | 4 | CH_egr_634 | 4 | 4 | 0.0000266013 |
| Erythranthe guttata | scaffold_2 | 4 | CH_egut_244 | 5 | 8 | 0.0000279616 |
| Eutrema salsugineum | scaffold_7 | 4 | CH_esa_24 | 9 | 11 | 0.000000000000301102 |
| Eutrema salsugineum | scaffold_4 | 4 | CH_esa_254 | 4 | 5 | 0.00068403 |
| Eutrema salsugineum | scaffold_3 | 4 | CH_esa_255 | 4 | 5 | 0.00068403 |
| Eutrema salsugineum | scaffold_14 | 4 | CH_esa_34 | 9 | 18 | 0.000000000252617 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_318 | 4 | 5 | 0.000244942 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_68 | 8 | 14 | 0.000000000192271 |
| Helianthus annuus | HanXRQChr14 | 4 | CH_han_120 | 13 | 75 | 0.0000000000215142 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_297 | 6 | 18 | 0.0000186418 |
| Medicago truncatula | chr3 | 4 | CH_mtr_114 | 14 | 74 | 0.00000000000231079 |
| Medicago truncatula | chr7 | 4 | CH_mtr_139 | 10 | 26 | 0.000000000023899 |
| Medicago truncatula | chr3 | 4 | CH_mtr_186 | 7 | 9 | 0.000000000719933 |
| Medicago truncatula | chr5 | 4 | CH_mtr_345 | 8 | 31 | 0.00000087907 |
| Medicago truncatula | chr2 | 4 | CH_mtr_421 | 6 | 14 | 0.0000092484 |
| Medicago truncatula | chr4 | 4 | CH_mtr_69 | 9 | 10 | 0.0000000000000078697 |
| Nicotiana tabacum | Nitab4.5_0000096 | 4 | CH_nta_146 | 4 | 7 | 0.000706205 |
| Nicotiana tabacum | Nitab4.5_0001770 | 4 | CH_nta_65 | 4 | 4 | 0.0000204568 |
| Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_75 | 9 | 16 | 0.000000000106625 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_291 | 5 | 13 | 0.000170805 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_31 | 9 | 15 | 0.00000000000042527 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_110 | 8 | 11 | 0.00000000000541117 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_116 | 8 | 12 | 0.0000000000161623 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_12 | 15 | 19 | 8.44819e-27 |
| Papaver somniferum | NW_020649859.1 | 4 | CH_pso_272 | 5 | 5 | 0.000000274735 |
| Papaver somniferum | NW_020618823.1 | 4 | CH_pso_495 | 5 | 11 | 0.000123806 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_496 | 5 | 11 | 0.000123806 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_573 | 4 | 5 | 0.000275408 |
| Quercus lobata | 5 | 4 | CH_qlo_250 | 7 | 8 | 0.0000000000587669 |
| Quercus lobata | 11 | 4 | CH_qlo_665 | 6 | 18 | 0.0000230813 |
| Quercus lobata | 11 | 4 | CH_qlo_855 | 8 | 67 | 0.000200309 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_86 | 14 | 72 | 0.00000000000000543164 |
| Rhododendron simsii | chr08 | 4 | CH_rsi_306 | 5 | 8 | 0.0000126137 |
| Salvia bowleyana | GWHASIU00000004 | 4 | CH_sbo_169 | 5 | 5 | 0.0000000380257 |
| Salvia bowleyana | GWHASIU00000003 | 4 | CH_sbo_427 | 6 | 37 | 0.000303562 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_299 | 7 | 8 | 0.0000000000037433 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_901 | 5 | 12 | 0.0000260102 |
| Solanum tuberosum | ST4.03ch08 | 4 | CH_stu_480 | 4 | 4 | 0.00015436 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 4 | CH_tpr_149 | 6 | 13 | 0.00000852683 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 4 | CH_tpr_235 | 4 | 4 | 0.0000911749 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_74 | 6 | 7 | 0.0000000361624 |
| Vitis vinifera | chr15 | 4 | CH_vvi_240 | 4 | 4 | 0.0000267508 |
| Vitis vinifera | chr3 | 4 | CH_vvi_368 | 6 | 30 | 0.000434178 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0016598 | protein arginylation | 2 |
| GO:0030433 | ubiquitin-dependent ERAD pathway | 2 |
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | 2 |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 6 |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 2 |
| GO:0043328 | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 14 |
| GO:0071596 | ubiquitin-dependent protein catabolic process via the N-end rule pathway | 26 |
| GO:0071629 | cytoplasm protein quality control by the ubiquitin-proteasome system | 4 |
| GO:1901485 | positive regulation of transcription factor catabolic process | 6 |
| GO:1990116 | ribosome-associated ubiquitin-dependent protein catabolic process | 12 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |