Functional clusters

Information

  • Type Gene Ontology
  • Description nucleobase-containing compound biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr6 3 CH_camsi_649 20 74 0.000222341
Davidia involucrata GWHABJS00000014 3 CH_din_387 16 49 0.000639921
Manihot esculenta Chromosome01 3 CH_mes_339 22 69 0.000188793
Quercus lobata 3 3 CH_qlo_950 12 26 0.000504426
Sapria himalayana scaffold35_5918515 3 CH_shi_248 5 6 0.000789282
Theobroma cacao Chromosome_10 3 CH_tca_284 15 37 0.0000785071
Zea mays 10 3 CH_zma_148 11 12 0.00000368422
Camellia sinensis var. sinensis Chr6 4 CH_camsi_649 20 74 0.000222341
Davidia involucrata GWHABJS00000014 4 CH_din_387 16 49 0.000639921
Manihot esculenta Chromosome01 4 CH_mes_339 22 69 0.000188793
Quercus lobata 3 4 CH_qlo_950 12 26 0.000504426
Sapria himalayana scaffold35_5918515 4 CH_shi_248 5 6 0.000789282
Theobroma cacao Chromosome_10 4 CH_tca_284 15 37 0.0000785071
Zea mays 10 4 CH_zma_148 11 12 0.00000368422

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0001172 transcription, RNA-templated 12
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006223 uracil salvage 2
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006269 DNA replication, synthesis of RNA primer 14
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006351 transcription, DNA-templated 10
GO:0006352 DNA-templated transcription, initiation 14
GO:0006353 DNA-templated transcription, termination 36
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006360 transcription by RNA polymerase I 14
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006368 transcription elongation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 42
GO:0006383 transcription by RNA polymerase III 10
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0006393 termination of mitochondrial transcription 2
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006741 NADP biosynthetic process 16
GO:0006747 FAD biosynthetic process 2
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0007004 telomere maintenance via telomerase 2
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0009299 mRNA transcription 4
GO:0009303 rRNA transcription 2
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015986 ATP synthesis coupled proton transport 22
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019305 dTDP-rhamnose biosynthetic process 6
GO:0019365 pyridine nucleotide salvage 6
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032264 IMP salvage 18
GO:0032774 RNA biosynthetic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0034355 NAD salvage 2
GO:0042276 error-prone translesion synthesis 36
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0042793 plastid transcription 2
GO:0042794 plastid rRNA transcription 2
GO:0043100 pyrimidine nucleobase salvage 10
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0046109 uridine biosynthetic process 2
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051973 positive regulation of telomerase activity 14
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070829 heterochromatin maintenance 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0097659 nucleic acid-templated transcription 10
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2001141 regulation of RNA biosynthetic process 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001