Functional clusters

Information

  • Type Gene Ontology
  • Description macromolecule modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr2 3 CH_camsi_777 16 42 0.000602339
Corylus avellana 2 3 CH_cav_82 27 67 0.00000000398378
Helianthus annuus HanXRQChr07 3 CH_han_605 15 34 0.000280564
Sequoiadendron giganteum chr11 3 CH_sgi_1301 14 36 0.000499998
Solanum tuberosum ST4.03ch03 3 CH_stu_231 24 60 0.000000465245
Camellia sinensis var. sinensis Chr2 4 CH_camsi_777 16 42 0.000602339
Corylus avellana 2 4 CH_cav_82 27 67 0.00000000398378
Helianthus annuus HanXRQChr07 4 CH_han_605 15 34 0.000280564
Sequoiadendron giganteum chr11 4 CH_sgi_1301 14 36 0.000499998
Solanum tuberosum ST4.03ch03 4 CH_stu_231 24 60 0.000000465245

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0000154 rRNA modification 10
GO:0000209 protein polyubiquitination 74
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0001510 RNA methylation 4
GO:0002084 protein depalmitoylation 6
GO:0002100 tRNA wobble adenosine to inosine editing 4
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 24
GO:0002949 tRNA threonylcarbamoyladenosine modification 8
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006400 tRNA modification 14
GO:0006464 cellular protein modification process 56
GO:0006468 protein phosphorylation 824
GO:0006470 protein dephosphorylation 2
GO:0006471 protein ADP-ribosylation 2
GO:0006479 protein methylation 2
GO:0006480 N-terminal protein amino acid methylation 10
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006499 N-terminal protein myristoylation 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 20
GO:0009249 protein lipoylation 2
GO:0009451 RNA modification 6
GO:0010390 histone monoubiquitination 20
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010426 DNA methylation on cytosine within a CHH sequence 8
GO:0010731 protein glutathionylation 56
GO:0016255 attachment of GPI anchor to protein 14
GO:0016554 cytidine to uridine editing 14
GO:0016567 protein ubiquitination 136
GO:0016569 covalent chromatin modification 2
GO:0016573 histone acetylation 4
GO:0016575 histone deacetylation 8
GO:0016579 protein deubiquitination 2
GO:0016598 protein arginylation 2
GO:0017003 protein-heme linkage 4
GO:0017009 protein-phycocyanobilin linkage 14
GO:0017014 protein nitrosylation 10
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 24
GO:0017196 N-terminal peptidyl-methionine acetylation 12
GO:0018023 peptidyl-lysine trimethylation 2
GO:0018108 peptidyl-tyrosine phosphorylation 6
GO:0018117 protein adenylylation 2
GO:0018142 protein-DNA covalent cross-linking 16
GO:0018171 peptidyl-cysteine oxidation 6
GO:0018193 peptidyl-amino acid modification 2
GO:0018205 peptidyl-lysine modification 6
GO:0018215 protein phosphopantetheinylation 8
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0018298 protein-chromophore linkage 2
GO:0018316 peptide cross-linking via L-cystine 2
GO:0018343 protein farnesylation 2
GO:0018345 protein palmitoylation 2
GO:0019988 charged-tRNA amino acid modification 12
GO:0030488 tRNA methylation 2
GO:0030592 DNA ADP-ribosylation 14
GO:0031119 tRNA pseudouridine synthesis 10
GO:0031365 N-terminal protein amino acid modification 10
GO:0031396 regulation of protein ubiquitination 2
GO:0032147 activation of protein kinase activity 10
GO:0032447 protein urmylation 2
GO:0032776 DNA methylation on cytosine 2
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033234 negative regulation of protein sumoylation 6
GO:0033523 histone H2B ubiquitination 2
GO:0034227 tRNA thio-modification 12
GO:0034720 histone H3-K4 demethylation 8
GO:0034968 histone lysine methylation 2
GO:0034970 histone H3-R2 methylation 2
GO:0035065 regulation of histone acetylation 6
GO:0035246 peptidyl-arginine N-methylation 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035600 tRNA methylthiolation 2
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 26
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0035970 peptidyl-threonine dephosphorylation 2
GO:0036066 protein O-linked fucosylation 14
GO:0036123 histone H3-K9 dimethylation 2
GO:0036211 protein modification process 6
GO:0036265 RNA (guanine-N7)-methylation 4
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043543 protein acylation 4
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0043686 co-translational protein modification 4
GO:0043967 histone H4 acetylation 6
GO:0043968 histone H2A acetylation 10
GO:0043970 histone H3-K9 acetylation 4
GO:0043971 histone H3-K18 acetylation 56
GO:0043981 histone H4-K5 acetylation 2
GO:0043984 histone H4-K16 acetylation 2
GO:0043985 histone H4-R3 methylation 2
GO:0043987 histone H3-S10 phosphorylation 2
GO:0044030 regulation of DNA methylation 6
GO:0045116 protein neddylation 2
GO:0046777 protein autophosphorylation 12
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0061715 miRNA 2'-O-methylation 6
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070262 peptidyl-serine dephosphorylation 24
GO:0070534 protein K63-linked ubiquitination 10
GO:0070544 histone H3-K36 demethylation 4
GO:0070647 protein modification by small protein conjugation or removal 2
GO:0070932 histone H3 deacetylation 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071108 protein K48-linked deubiquitination 4
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0080009 mRNA methylation 12
GO:0080058 protein deglutathionylation 4
GO:0080156 mitochondrial mRNA modification 10
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0080178 5-carbamoylmethyl uridine residue modification 2
GO:0090042 tubulin deacetylation 6
GO:0090116 C-5 methylation of cytosine 4
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0097503 sialylation 2
GO:0098532 histone H3-K27 trimethylation 4
GO:0098734 macromolecule depalmitoylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1900865 chloroplast RNA modification 8
GO:1900871 chloroplast mRNA modification 8
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901537 positive regulation of DNA demethylation 18
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1904380 endoplasmic reticulum mannose trimming 14
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1905642 negative regulation of DNA methylation 10
GO:1990164 histone H2A phosphorylation 8
GO:1990937 xylan acetylation 10
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001