Functional clusters

Information

  • Type Gene Ontology
  • Description RNA processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr10 3 CH_camsi_270 9 18 0.000000188602
Hydrangea macrophylla Hma1.2p1_0628F.1 3 CH_hma_316 6 13 0.000805803
Camellia sinensis var. sinensis Chr10 4 CH_camsi_270 9 18 0.000000188602
Hydrangea macrophylla Hma1.2p1_0628F.1 4 CH_hma_316 6 13 0.000805803

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 10
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000372 Group I intron splicing 10
GO:0000373 Group II intron splicing 14
GO:0000375 RNA splicing, via transesterification reactions 4
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000387 spliceosomal snRNP assembly 2
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 20
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0000963 mitochondrial RNA processing 6
GO:0000964 mitochondrial RNA 5'-end processing 10
GO:0000966 RNA 5'-end processing 24
GO:0002100 tRNA wobble adenosine to inosine editing 4
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 24
GO:0002949 tRNA threonylcarbamoyladenosine modification 8
GO:0006364 rRNA processing 10
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006376 mRNA splice site selection 8
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 8
GO:0006397 mRNA processing 8
GO:0006400 tRNA modification 14
GO:0008033 tRNA processing 2
GO:0008380 RNA splicing 16
GO:0009452 7-methylguanosine RNA capping 10
GO:0016180 snRNA processing 6
GO:0019988 charged-tRNA amino acid modification 12
GO:0030422 production of siRNA involved in RNA interference 2
GO:0030488 tRNA methylation 2
GO:0031054 pre-miRNA processing 2
GO:0031119 tRNA pseudouridine synthesis 10
GO:0031425 chloroplast RNA processing 2
GO:0034227 tRNA thio-modification 12
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 4
GO:0034472 snRNA 3'-end processing 2
GO:0034477 U6 snRNA 3'-end processing 8
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0035600 tRNA methylthiolation 2
GO:0042779 tRNA 3'-trailer cleavage 4
GO:0043144 sno(s)RNA processing 4
GO:0043484 regulation of RNA splicing 2
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0071076 RNA 3' uridylation 18
GO:0072684 mitochondrial tRNA 3'-trailer cleavage, endonucleolytic 2
GO:0080178 5-carbamoylmethyl uridine residue modification 2
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:0090615 mitochondrial mRNA processing 10
GO:0090617 mitochondrial mRNA 5'-end processing 74
GO:0097222 mitochondrial mRNA polyadenylation 6
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000636 positive regulation of primary miRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001