Functional clusters
Information
- Type Gene Ontology
- Description RNA splicing
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 3 | CH_amhyb_29 | 7 | 10 | 0.000000000973601 |
Corylus avellana | 4 | 3 | CH_cav_304 | 5 | 12 | 0.000207812 |
Coffea canephora | chr4 | 3 | CH_ccan_354 | 3 | 6 | 0.000485629 |
Eucalyptus grandis | Chr04 | 3 | CH_egr_862 | 5 | 17 | 0.000707969 |
Glycine max | Gm11 | 3 | CH_gma_505 | 4 | 6 | 0.000733775 |
Medicago truncatula | chr4 | 3 | CH_mtr_272 | 5 | 5 | 0.0000000569926 |
Quercus lobata | 7 | 3 | CH_qlo_756 | 6 | 19 | 0.0000715517 |
Salix brachista | GWHAAZH00000015 | 3 | CH_sbr_302 | 4 | 5 | 0.000232012 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 4 | CH_amhyb_29 | 7 | 10 | 0.000000000973601 |
Corylus avellana | 4 | 4 | CH_cav_304 | 5 | 12 | 0.000207812 |
Coffea canephora | chr4 | 4 | CH_ccan_354 | 3 | 6 | 0.000485629 |
Eucalyptus grandis | Chr04 | 4 | CH_egr_862 | 5 | 17 | 0.000707969 |
Glycine max | Gm11 | 4 | CH_gma_505 | 4 | 6 | 0.000733775 |
Medicago truncatula | chr4 | 4 | CH_mtr_272 | 5 | 5 | 0.0000000569926 |
Quercus lobata | 7 | 4 | CH_qlo_756 | 6 | 19 | 0.0000715517 |
Salix brachista | GWHAAZH00000015 | 4 | CH_sbr_302 | 4 | 5 | 0.000232012 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000244 | spliceosomal tri-snRNP complex assembly | 20 |
GO:0000245 | spliceosomal complex assembly | 24 |
GO:0000350 | generation of catalytic spliceosome for second transesterification step | 6 |
GO:0000354 | cis assembly of pre-catalytic spliceosome | 2 |
GO:0000372 | Group I intron splicing | 10 |
GO:0000373 | Group II intron splicing | 14 |
GO:0000375 | RNA splicing, via transesterification reactions | 4 |
GO:0000380 | alternative mRNA splicing, via spliceosome | 2 |
GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 4 |
GO:0000387 | spliceosomal snRNP assembly | 2 |
GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | 2 |
GO:0000395 | mRNA 5'-splice site recognition | 2 |
GO:0000398 | mRNA splicing, via spliceosome | 20 |
GO:0006376 | mRNA splice site selection | 8 |
GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | 8 |
GO:0043484 | regulation of RNA splicing | 2 |
GO:0045292 | mRNA cis splicing, via spliceosome | 22 |
GO:0048026 | positive regulation of mRNA splicing, via spliceosome | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |