Functional clusters

Information

  • Type Gene Ontology
  • Description RNA splicing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 3 CH_amhyb_29 7 10 0.000000000973601
Corylus avellana 4 3 CH_cav_304 5 12 0.000207812
Coffea canephora chr4 3 CH_ccan_354 3 6 0.000485629
Eucalyptus grandis Chr04 3 CH_egr_862 5 17 0.000707969
Glycine max Gm11 3 CH_gma_505 4 6 0.000733775
Medicago truncatula chr4 3 CH_mtr_272 5 5 0.0000000569926
Quercus lobata 7 3 CH_qlo_756 6 19 0.0000715517
Salix brachista GWHAAZH00000015 3 CH_sbr_302 4 5 0.000232012
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 4 CH_amhyb_29 7 10 0.000000000973601
Corylus avellana 4 4 CH_cav_304 5 12 0.000207812
Coffea canephora chr4 4 CH_ccan_354 3 6 0.000485629
Eucalyptus grandis Chr04 4 CH_egr_862 5 17 0.000707969
Glycine max Gm11 4 CH_gma_505 4 6 0.000733775
Medicago truncatula chr4 4 CH_mtr_272 5 5 0.0000000569926
Quercus lobata 7 4 CH_qlo_756 6 19 0.0000715517
Salix brachista GWHAAZH00000015 4 CH_sbr_302 4 5 0.000232012

Available child term results

Ontology identifier Description Number of clusters
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000372 Group I intron splicing 10
GO:0000373 Group II intron splicing 14
GO:0000375 RNA splicing, via transesterification reactions 4
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000387 spliceosomal snRNP assembly 2
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 20
GO:0006376 mRNA splice site selection 8
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 8
GO:0043484 regulation of RNA splicing 2
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001