List of all miRNAs

All miRNAs were clustered in 92 sets of comparable sequence (first column). The sequence is shown in the second column and the third column marks if we can find a target for this miRNA. Each sub-miRNA in turn can be encoded by one or more precursor molecules. These are shown in the fourth column and link to a page with more information on each precursor. Note that the same location on the genome can contain different precursor molecules that differ only by a few nucleotides in length. This can be seen in the fifth column. The last column marks if this precursor molecule corresponds to a miRNA precursor in the RFAM database.

miRNA sequence target precursor Location Rfam
MIR1 UGUGUUCUCAGGUCACCCCUUUG * prec4140 chr2:1040943>1041031 ath-MIR398a
MIR2 CAAAAGAGAUAGUGUUUUUG * prec6659 chr4:14546039<14546319
MIR3 UACUCCCUCCUUGUUUUAAUAG
prec10971 chr3:16857412>16857651
MIR4 CUUAUAUUAUAAAACGGAGG * prec9466 chr2:14422407>14422617
MIR5 UCGGACCAGGCUUCAUUCCC * prec10576 chr5:17533536>17533624 ath-MIR166f
prec14492 chr2:19183197>19183330 ath-MIR166a
prec16219 chr3:22933186>22933295 ath-MIR166b
MIR6 GGGAAUGAAGCCUGGUCCGA * prec10580 chr5:17533536<17533624 rev. comp. of ath-MIR166f
MIR7 UGCAUGAUAAGUUGUAAAGA
prec18615 chr4:4996992<4997200
MIR8 CGGAGGAACUCGUCGCCGUC
prec17393 chr1:26890735<26890939
MIR9 CAUCAUUGAGUGCAGCGUUGAUG * prec16138 chr4:2625956>2626046 ath-MIR397a
MIR10 AUCCAAAGGGAUCGCAUUGAUCCU * prec15007 chr3:20702635>20702776 ath-MIR393b
MIR11 AGGAUCAAUGCGAUCCCUUUGGAU * prec15013 chr3:20702635<20702776 rev. comp. of ath-MIR393b
MIR12 AGGCAAGUCAUCCUUGGCUAC * prec5388 chr3:9873595>9873741 rev. comp. of ath-MIR169j
prec5688 chr3:9879801>9879948 rev. comp. of ath-MIR169n
MIR13 GUAGCCAAGGAUGACUUGCCU * prec5396 chr3:9873594<9873741 ath-MIR169j
prec5696 chr3:9879800<9879948 ath-MIR169n
MIR14 UCUUCCACAGCUUUCUUGAACUGCA * prec18778 chr2:4149413<4149547 ath-MIR396a
MIR15 UUCCACAGCUUUCUUGAACU * prec18783 chr2:4149415<4149545 ath-MIR396a
MIR16 UGCCAAAGGAGAGUUGCCCU * prec16355 chr5:24979722>24979813 ath-MIR399c
MIR17 UGACAGAAGAGAGUGAGCACAC
prec18857 chr5:3456648<3456733 ath-MIR156d
prec19162 chr5:3867214>3867309 ath-MIR156e
prec3217 chr5:9136129>9136218 ath-MIR156f
prec3817 chr2:10683551<10683632 ath-MIR156a
prec8580 chr4:15415434<15415516 ath-MIR156c
MIR18 GAAUCUUGAUGAUGCUGCAUC * prec6903 chr5:1188211<1188301 ath-MIR172b
MIR19 UUUUGUUCCAAAAAUACCAUCAC
prec1637 chr4:9089133<9089361
MIR20 UCCAAAGGGAUCGCAUUGAUC * prec10738 chr2:16659189>16659301 ath-MIR393a
prec15019 chr3:20702636>20702775 ath-MIR393b
MIR21 AUGAGAAUCUUGAUGAUGCUGCA * prec19372 chr3:3599798<3599898 ath-MIR172c
MIR22 CUCGGACCAGGCUUCAUUCCC
prec16495 chr5:25522041>25522127 ath-MIR166g
MIR23 UUAUAUCGUGAAACGGAGGGAGU
prec13581 chr1:19239434>19239652
MIR24 CAGGGCAACUCUCCUUUGGCAGG
prec16109 chr1:23349052>23349165 rev. comp. of MIR399b
MIR25 CUCCCUCUGUUUCAUAAUAUAAGU * prec6950 chr5:14458264>14458465
prec7625 chr5:14517564>14517765
MIR26 AAGCUCAGGAGGGAUAGCGCC
prec10235 chr2:16069049>16069119 ath-MIR390a
prec15768 chr5:23654187>23654277 ath-MIR390b
MIR27 CUGCCAAAGGAGAUUUGCCC * prec5831 chr1:10227071>10227169 ath-MIR399a
prec9554 chr2:14452088>14452181 ath-MIR399f
MIR28 UGACAGAUAGAGCAGUGAGCACGC
prec8480 chr4:15415434>15415516 rev. comp. of ath-MIR156c
MIR29 GUUGGAGAAGCAGGGCACGUGCA * prec14624 chr2:19527838>19527919 ath-MIR164a
MIR30 UCUGAUUGAGCCGCGCCAAUAUC * prec14310 chr3:19084429>19084520 ath-MIR171a
MIR31 AUUGUGAAACUGAGGGAGUAUU * prec11688 chr5:19523119<19523341
MIR32 AUUGUGAAACUGAGGGAGUA * prec11764 chr5:19523121<19523339
MIR33 UUCCGUUUCACAAUAUAAGU
prec16717 chr5:26307851>26308053
MIR34 GAGUUCCCCCAAACACUUCA * prec17111 chr1:26273652>26273731 rev. comp. of ath-MIR395d
MIR35 AGCCAAGGAUGACUUGCCGAU
prec14514 chr1:20043171<20043242 ath-MIR169d
MIR36 UGAAGCUGCCAGCAUGAUCUG
prec6305 chr1:11137537>11137878 ath-MIR167d
MIR37 GGUUGGUAAUACCAACUUGG
prec17361 chr3:2198889<2199103
MIR38 CCGAGAUUUAAAACCCUAGU
prec18890 chr1:44932>45085
MIR39 CUUCAUCUUCAUCAUCAUCAG * prec1402 chr1:582728>582813
MIR40 UAUGCCUGGCUCCCUGUAUGCCAC * prec11509 chr5:19026323<19026407 ath-MIR160c
MIR41 UUGGAUUGAAGGGAGCUCUACAUCU
prec17589 chr1:27716890<27717081 ath-MIR159a
MIR42 UCAUUACUUCCAAAUACAGA
prec1940 chr3:6685968<6686317
MIR43 GGUAGCCAAGGAUGACUUGCCU * prec1875 chr1:6695453<6695557 ath-MIR169h
prec5314 chr3:9873236<9873365 ath-MIR169i
prec5466 chr3:9876805<9876934 ath-MIR169k
prec5614 chr3:9879446<9879577 ath-MIR169m
MIR44 AGGCAAGUCAUCCUUGGCUACC * prec1869 chr1:6695455>6695557 rev. comp of ath-MIR169h
prec5308 chr3:9873236>9873365 rev comp. of ath-MIR169i
prec5460 chr3:9876805>9876934 rev. comp. of ath-MIR169k
prec5608 chr3:9879446>9879577 rev. comp. of ath-MIR169m
MIR45 GGGUGAAUCCAUUCAUUGAC
prec18914 chr2:4316608<4316706
MIR46 UGAUUGAGCCGUGCCAAUAUC * prec15845 chr1:22933763<22933841 ath-MIR171c
MIR47 UAGCCAAGGAUGACUUGCCUGU * prec5566 chr3:9879448<9879575 ath-MIR169m
MIR48 CUUCGGACCAGGCUUCAUUCCCC
prec14486 chr2:19183196>19183331 ath-MIR166a
MIR49 GAUAUUGGUGCGGUUCAAUCAGAAA
prec15851 chr1:22933763<22933841 5' arm of ath-MIR171c
MIR50 CCAGACAACAUUCCCCUCAACUG
prec2330 chr1:78927>79039 rev. comp. of ath-MIR165a
MIR51 UUAUAUUGUAAAACGGAGGGAG * prec7578 chr5:14458264>14458465
prec8205 chr5:14517564>14517765
MIR52 CUAAUUUGAAACGGAGGGAAUA
prec18950 chr4:5645667<5645912
MIR53 AGAUCAUGCUGGCAGCUUCAUC * prec3037 chr3:8108095<8108199 rev. comp. of ath-MIR167a
MIR54 UGAAGCUGCCAGCAUGAUCUAA * prec3059 chr3:8108097>8108197 ath-MIR167a
MIR55 AACUUAUAUUGUGAAACGAAGGGA * prec3375 chr4:11769012>11769226
MIR56 AGGCAAGUCAUCCUUGGCUA * prec5540 chr3:9877151>9877297 rev. comp. of ath-MIR169l
MIR57 UAGCCAAGGAUGACUUGCCU * prec5548 chr3:9877151<9877297 ath-MIR169l
MIR58 GAUUGAGCCGUGCCAAUAUCAC * prec19467 chr1:3961368<3961451 ath-MIR171b
MIR59 UUUCCACAGCUUUCUUGAACUU * prec6560 chr5:13629037>13629153 ath-MIR396b
MIR60 AAGUUCAAGAAAGCUGUGGAAA * prec6566 chr5:13629037<13629153 rev. comp. of ath-MIR396b
MIR61 GUGCUCACCUCUCUUUCUGUCAG
prec8252 chr4:15074950>15075031 3' arm of ath-MIR156b
MIR62 AGGCAAGUCAUCCUUGGCUACCA
prec5320 chr3:9873236>9873366 rev. comp. of ath-MIR169i
prec5472 chr3:9876805>9876935 rev. comp. of ath-MIR169k
prec5620 chr3:9879446>9879578 rev. comp. of ath-MIR169m
MIR63 CUGACAGAAGAGAGUGAGCACACA * prec3773 chr2:10683550<10683633 ath-MIR156a
prec8512 chr4:15415433<15415517 ath-MIR156c
MIR64 UGAAGUGUUUGGGGGAACUC
prec16988 chr1:26276449<26276523 ath-MIR395e
prec17162 chr1:26273652<26273731 ath-MIR395d
prec4296 chr1:9363193<9363265 ath-MIR395a
MIR65 GUGGCAUCAUCAAGAUUCACA
prec5750 chr2:11949997<11950088 5' arm of ath-MIR172a
MIR66 GGGCAAAUCUCCUUUGGCAGA
prec9548 chr2:14452088<14452181 rev. comp. of MIR399f
MIR67 UCUGCCAAAGGAGAUUUGCC * prec9530 chr2:14450596>14450678 ath-MIR399e
MIR68 UGACAGAAAGAGCAGUGAGCACGC
prec3737 chr2:10683551>10683632 rev. comp. of ath-MIR156a
MIR69 UGCUUGGACUGAAGGGAGCUCCCU
prec10065 chr5:16677697<16677868 ath-MIR319b
MIR70 UCGGACCAGGCUUCAUUCCCCUCA * prec10096 chr5:16792749<16792889 ath-MIR166e
prec10608 chr5:17533605>17533963
MIR71 AUGGAUGUCAUUAUCCAUCAUU
prec4184 chr5:9872647<9872813
MIR72 AUUGUGAAACGGAGAGAAUAUU * prec8640 chr2:14422400<14422624
MIR73 AACUUAUAUUGUGAAACGGAGAGA * prec8777 chr2:14422405<14422619
MIR74 AGGGGUGACCUGAGAACACA
prec304 chr5:4694708<4694800 rev. comp. of ath-MIR398c
MIR75 UGCCUGGCUCCCUGUAUGCCAC
prec11497 chr5:19026325<19026405 ath-MIR160c
prec2098 chr4:9888999>9889079 ath-MIR160b
MIR76 CCGGCAAGUCAUCCUUGGCU * prec1102 chr3:4805724>4805824 rev. comp. of ath-MIR169f
prec3110 chr4:11483046>11483124 rev. comp. of ath-MIR169g
MIR77 AGCCAAGGAUGACUUGCCGG * prec1109 chr3:4805724<4805824 ath-MIR169f
prec3121 chr4:11483046<11483124 ath-MIR169g
MIR78 GGAGGUGGGCAUACUGCCAAU
prec17679 chr1:28573715>28573809 rev. comp of ath-MIR394b
MIR79 ACUUAUAAUGAAACGGAGGGAGU
prec19001 chr2:424767>424944
MIR80 CGGCAAGUCAUCCUUGGCUGCA * prec2911 chr5:8527512<8527616 rev. comp. of ath-MIR169b
MIR81 UGCAGCCAAGGAUGACUUGCCG * prec2908 chr5:8527512>8527616 ath-MIR169b
MIR82 UGGAGAAGCAGGGCACGUGC * prec4152 chr5:9852688>9852769 ath-MIR164c
MIR83 GCACGUGCCCUGCUUCUCCA
prec14632 chr2:19527840<19527917 rev. comp. of ath-MIR164a
prec4160 chr5:9852688<9852769 rev. comp. of ath-MIR164c
MIR84 GUGGGAAUCUUGAUGAUGCUGCAUC * prec16075 chr5:24005707>24005813 ath-MIR172e
MIR85 UGACAGAAGAGAGUGAGCACA * prec8284 chr4:15074951>15075030 ath-MIR156b
MIR86 CGGCAAGUCAUCCUUGGCUG * prec9821 chr5:15887903>15888116 rev. comp. of ath-MIR169c
MIR87 CAGCCAAGGAUGACUUGCCG * prec9825 chr5:15887904<15888116 ath-MIR169c
MIR88 UUGGAUUGAAGGGAGCUCCU * prec14336 chr2:19001715>19001919 ath-MIR159c
MIR89 CACUCCCUCCGUUUCACAAUAUAA * prec12509 chr1:19239433>19239652
MIR90 CUUAUAUUAUGAAACGAAGGGA
prec134 chr3:4118509<4118685
MIR91 UUGACAGAAGAGAGUGAGCACAC * prec18871 chr5:3456648<3456734 ath-MIR156dath-MIR156d
MIR92 GUUCAAUAAAGCUGUGGGAA
prec18774 chr2:4149414<4149545 3' arm of ath-MIR396a