All miRNAs were clustered in 92 sets of comparable sequence (first column). The sequence is shown in the second column and the third column marks if we can find a target for this miRNA. Each sub-miRNA in turn can be encoded by one or more precursor molecules. These are shown in the fourth column and link to a page with more information on each precursor. Note that the same location on the genome can contain different precursor molecules that differ only by a few nucleotides in length. This can be seen in the fifth column. The last column marks if this precursor molecule corresponds to a miRNA precursor in the RFAM database.
miRNA | sequence | target | precursor | Location | Rfam |
---|---|---|---|---|---|
MIR1 | UGUGUUCUCAGGUCACCCCUUUG | * | prec4140 | chr2:1040943>1041031 | ath-MIR398a |
MIR2 | CAAAAGAGAUAGUGUUUUUG | * | prec6659 | chr4:14546039<14546319 | |
MIR3 | UACUCCCUCCUUGUUUUAAUAG | prec10971 | chr3:16857412>16857651 | ||
MIR4 | CUUAUAUUAUAAAACGGAGG | * | prec9466 | chr2:14422407>14422617 | |
MIR5 | UCGGACCAGGCUUCAUUCCC | * | prec10576 | chr5:17533536>17533624 | ath-MIR166f |
prec14492 | chr2:19183197>19183330 | ath-MIR166a | |||
prec16219 | chr3:22933186>22933295 | ath-MIR166b | |||
MIR6 | GGGAAUGAAGCCUGGUCCGA | * | prec10580 | chr5:17533536<17533624 | rev. comp. of ath-MIR166f |
MIR7 | UGCAUGAUAAGUUGUAAAGA | prec18615 | chr4:4996992<4997200 | ||
MIR8 | CGGAGGAACUCGUCGCCGUC | prec17393 | chr1:26890735<26890939 | ||
MIR9 | CAUCAUUGAGUGCAGCGUUGAUG | * | prec16138 | chr4:2625956>2626046 | ath-MIR397a |
MIR10 | AUCCAAAGGGAUCGCAUUGAUCCU | * | prec15007 | chr3:20702635>20702776 | ath-MIR393b |
MIR11 | AGGAUCAAUGCGAUCCCUUUGGAU | * | prec15013 | chr3:20702635<20702776 | rev. comp. of ath-MIR393b |
MIR12 | AGGCAAGUCAUCCUUGGCUAC | * | prec5388 | chr3:9873595>9873741 | rev. comp. of ath-MIR169j |
prec5688 | chr3:9879801>9879948 | rev. comp. of ath-MIR169n |
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MIR13 | GUAGCCAAGGAUGACUUGCCU | * | prec5396 | chr3:9873594<9873741 | ath-MIR169j |
prec5696 | chr3:9879800<9879948 | ath-MIR169n |
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MIR14 | UCUUCCACAGCUUUCUUGAACUGCA | * | prec18778 | chr2:4149413<4149547 | ath-MIR396a |
MIR15 | UUCCACAGCUUUCUUGAACU | * | prec18783 | chr2:4149415<4149545 | ath-MIR396a |
MIR16 | UGCCAAAGGAGAGUUGCCCU | * | prec16355 | chr5:24979722>24979813 | ath-MIR399c |
MIR17 | UGACAGAAGAGAGUGAGCACAC | prec18857 | chr5:3456648<3456733 | ath-MIR156d | |
prec19162 | chr5:3867214>3867309 | ath-MIR156e | |||
prec3217 | chr5:9136129>9136218 | ath-MIR156f | |||
prec3817 | chr2:10683551<10683632 | ath-MIR156a | |||
prec8580 | chr4:15415434<15415516 | ath-MIR156c | |||
MIR18 | GAAUCUUGAUGAUGCUGCAUC | * | prec6903 | chr5:1188211<1188301 | ath-MIR172b |
MIR19 | UUUUGUUCCAAAAAUACCAUCAC | prec1637 | chr4:9089133<9089361 | ||
MIR20 | UCCAAAGGGAUCGCAUUGAUC | * | prec10738 | chr2:16659189>16659301 | ath-MIR393a |
prec15019 | chr3:20702636>20702775 | ath-MIR393b |
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MIR21 | AUGAGAAUCUUGAUGAUGCUGCA | * | prec19372 | chr3:3599798<3599898 | ath-MIR172c |
MIR22 | CUCGGACCAGGCUUCAUUCCC | prec16495 | chr5:25522041>25522127 | ath-MIR166g | |
MIR23 | UUAUAUCGUGAAACGGAGGGAGU | prec13581 | chr1:19239434>19239652 | ||
MIR24 | CAGGGCAACUCUCCUUUGGCAGG | prec16109 | chr1:23349052>23349165 | rev. comp. of MIR399b |
|
MIR25 | CUCCCUCUGUUUCAUAAUAUAAGU | * | prec6950 | chr5:14458264>14458465 | |
prec7625 | chr5:14517564>14517765 | ||||
MIR26 | AAGCUCAGGAGGGAUAGCGCC | prec10235 | chr2:16069049>16069119 | ath-MIR390a |
|
prec15768 | chr5:23654187>23654277 | ath-MIR390b |
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MIR27 | CUGCCAAAGGAGAUUUGCCC | * | prec5831 | chr1:10227071>10227169 | ath-MIR399a |
prec9554 | chr2:14452088>14452181 | ath-MIR399f |
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MIR28 | UGACAGAUAGAGCAGUGAGCACGC | prec8480 | chr4:15415434>15415516 | rev. comp. of ath-MIR156c | |
MIR29 | GUUGGAGAAGCAGGGCACGUGCA | * | prec14624 | chr2:19527838>19527919 | ath-MIR164a |
MIR30 | UCUGAUUGAGCCGCGCCAAUAUC | * | prec14310 | chr3:19084429>19084520 | ath-MIR171a |
MIR31 | AUUGUGAAACUGAGGGAGUAUU | * | prec11688 | chr5:19523119<19523341 | |
MIR32 | AUUGUGAAACUGAGGGAGUA | * | prec11764 | chr5:19523121<19523339 | |
MIR33 | UUCCGUUUCACAAUAUAAGU | prec16717 | chr5:26307851>26308053 | ||
MIR34 | GAGUUCCCCCAAACACUUCA | * | prec17111 | chr1:26273652>26273731 | rev. comp. of ath-MIR395d |
MIR35 | AGCCAAGGAUGACUUGCCGAU | prec14514 | chr1:20043171<20043242 | ath-MIR169d |
|
MIR36 | UGAAGCUGCCAGCAUGAUCUG | prec6305 | chr1:11137537>11137878 | ath-MIR167d |
|
MIR37 | GGUUGGUAAUACCAACUUGG | prec17361 | chr3:2198889<2199103 | ||
MIR38 | CCGAGAUUUAAAACCCUAGU | prec18890 | chr1:44932>45085 | ||
MIR39 | CUUCAUCUUCAUCAUCAUCAG | * | prec1402 | chr1:582728>582813 | |
MIR40 | UAUGCCUGGCUCCCUGUAUGCCAC | * | prec11509 | chr5:19026323<19026407 | ath-MIR160c |
MIR41 | UUGGAUUGAAGGGAGCUCUACAUCU | prec17589 | chr1:27716890<27717081 | ath-MIR159a | |
MIR42 | UCAUUACUUCCAAAUACAGA | prec1940 | chr3:6685968<6686317 | ||
MIR43 | GGUAGCCAAGGAUGACUUGCCU | * | prec1875 | chr1:6695453<6695557 | ath-MIR169h |
prec5314 | chr3:9873236<9873365 | ath-MIR169i |
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prec5466 | chr3:9876805<9876934 | ath-MIR169k |
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prec5614 | chr3:9879446<9879577 | ath-MIR169m |
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MIR44 | AGGCAAGUCAUCCUUGGCUACC | * | prec1869 | chr1:6695455>6695557 | rev. comp of ath-MIR169h |
prec5308 | chr3:9873236>9873365 | rev comp. of ath-MIR169i | |||
prec5460 | chr3:9876805>9876934 | rev. comp. of ath-MIR169k | |||
prec5608 | chr3:9879446>9879577 | rev. comp. of ath-MIR169m | |||
MIR45 | GGGUGAAUCCAUUCAUUGAC | prec18914 | chr2:4316608<4316706 | ||
MIR46 | UGAUUGAGCCGUGCCAAUAUC | * | prec15845 | chr1:22933763<22933841 | ath-MIR171c |
MIR47 | UAGCCAAGGAUGACUUGCCUGU | * | prec5566 | chr3:9879448<9879575 | ath-MIR169m |
MIR48 | CUUCGGACCAGGCUUCAUUCCCC | prec14486 | chr2:19183196>19183331 | ath-MIR166a | |
MIR49 | GAUAUUGGUGCGGUUCAAUCAGAAA | prec15851 | chr1:22933763<22933841 | 5' arm of ath-MIR171c |
|
MIR50 | CCAGACAACAUUCCCCUCAACUG | prec2330 | chr1:78927>79039 | rev. comp. of ath-MIR165a | |
MIR51 | UUAUAUUGUAAAACGGAGGGAG | * | prec7578 | chr5:14458264>14458465 | |
prec8205 | chr5:14517564>14517765 | ||||
MIR52 | CUAAUUUGAAACGGAGGGAAUA | prec18950 | chr4:5645667<5645912 | ||
MIR53 | AGAUCAUGCUGGCAGCUUCAUC | * | prec3037 | chr3:8108095<8108199 | rev. comp. of ath-MIR167a |
MIR54 | UGAAGCUGCCAGCAUGAUCUAA | * | prec3059 | chr3:8108097>8108197 | ath-MIR167a |
MIR55 | AACUUAUAUUGUGAAACGAAGGGA | * | prec3375 | chr4:11769012>11769226 | |
MIR56 | AGGCAAGUCAUCCUUGGCUA | * | prec5540 | chr3:9877151>9877297 | rev. comp. of ath-MIR169l |
MIR57 | UAGCCAAGGAUGACUUGCCU | * | prec5548 | chr3:9877151<9877297 | ath-MIR169l |
MIR58 | GAUUGAGCCGUGCCAAUAUCAC | * | prec19467 | chr1:3961368<3961451 | ath-MIR171b |
MIR59 | UUUCCACAGCUUUCUUGAACUU | * | prec6560 | chr5:13629037>13629153 | ath-MIR396b |
MIR60 | AAGUUCAAGAAAGCUGUGGAAA | * | prec6566 | chr5:13629037<13629153 | rev. comp. of ath-MIR396b |
MIR61 | GUGCUCACCUCUCUUUCUGUCAG | prec8252 | chr4:15074950>15075031 | 3' arm of ath-MIR156b | |
MIR62 | AGGCAAGUCAUCCUUGGCUACCA | prec5320 | chr3:9873236>9873366 | rev. comp. of ath-MIR169i |
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prec5472 | chr3:9876805>9876935 | rev. comp. of ath-MIR169k |
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prec5620 | chr3:9879446>9879578 | rev. comp. of ath-MIR169m |
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MIR63 | CUGACAGAAGAGAGUGAGCACACA | * | prec3773 | chr2:10683550<10683633 | ath-MIR156a |
prec8512 | chr4:15415433<15415517 | ath-MIR156c | |||
MIR64 | UGAAGUGUUUGGGGGAACUC | prec16988 | chr1:26276449<26276523 | ath-MIR395e |
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prec17162 | chr1:26273652<26273731 | ath-MIR395d |
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prec4296 | chr1:9363193<9363265 | ath-MIR395a |
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MIR65 | GUGGCAUCAUCAAGAUUCACA | prec5750 | chr2:11949997<11950088 | 5' arm of ath-MIR172a | |
MIR66 | GGGCAAAUCUCCUUUGGCAGA | prec9548 | chr2:14452088<14452181 | rev. comp. of MIR399f |
|
MIR67 | UCUGCCAAAGGAGAUUUGCC | * | prec9530 | chr2:14450596>14450678 | ath-MIR399e |
MIR68 | UGACAGAAAGAGCAGUGAGCACGC | prec3737 | chr2:10683551>10683632 | rev. comp. of ath-MIR156a | |
MIR69 | UGCUUGGACUGAAGGGAGCUCCCU | prec10065 | chr5:16677697<16677868 | ath-MIR319b | |
MIR70 | UCGGACCAGGCUUCAUUCCCCUCA | * | prec10096 | chr5:16792749<16792889 | ath-MIR166e |
prec10608 | chr5:17533605>17533963 | ||||
MIR71 | AUGGAUGUCAUUAUCCAUCAUU | prec4184 | chr5:9872647<9872813 | ||
MIR72 | AUUGUGAAACGGAGAGAAUAUU | * | prec8640 | chr2:14422400<14422624 | |
MIR73 | AACUUAUAUUGUGAAACGGAGAGA | * | prec8777 | chr2:14422405<14422619 | |
MIR74 | AGGGGUGACCUGAGAACACA | prec304 | chr5:4694708<4694800 | rev. comp. of ath-MIR398c |
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MIR75 | UGCCUGGCUCCCUGUAUGCCAC | prec11497 | chr5:19026325<19026405 | ath-MIR160c | |
prec2098 | chr4:9888999>9889079 | ath-MIR160b | |||
MIR76 | CCGGCAAGUCAUCCUUGGCU | * | prec1102 | chr3:4805724>4805824 | rev. comp. of ath-MIR169f |
prec3110 | chr4:11483046>11483124 | rev. comp. of ath-MIR169g |
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MIR77 | AGCCAAGGAUGACUUGCCGG | * | prec1109 | chr3:4805724<4805824 | ath-MIR169f |
prec3121 | chr4:11483046<11483124 | ath-MIR169g | |||
MIR78 | GGAGGUGGGCAUACUGCCAAU | prec17679 | chr1:28573715>28573809 | rev. comp of ath-MIR394b |
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MIR79 | ACUUAUAAUGAAACGGAGGGAGU | prec19001 | chr2:424767>424944 | ||
MIR80 | CGGCAAGUCAUCCUUGGCUGCA | * | prec2911 | chr5:8527512<8527616 | rev. comp. of ath-MIR169b |
MIR81 | UGCAGCCAAGGAUGACUUGCCG | * | prec2908 | chr5:8527512>8527616 | ath-MIR169b |
MIR82 | UGGAGAAGCAGGGCACGUGC | * | prec4152 | chr5:9852688>9852769 | ath-MIR164c |
MIR83 | GCACGUGCCCUGCUUCUCCA | prec14632 | chr2:19527840<19527917 | rev. comp. of ath-MIR164a | |
prec4160 | chr5:9852688<9852769 | rev. comp. of ath-MIR164c |
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MIR84 | GUGGGAAUCUUGAUGAUGCUGCAUC | * | prec16075 | chr5:24005707>24005813 | ath-MIR172e |
MIR85 | UGACAGAAGAGAGUGAGCACA | * | prec8284 | chr4:15074951>15075030 | ath-MIR156b |
MIR86 | CGGCAAGUCAUCCUUGGCUG | * | prec9821 | chr5:15887903>15888116 | rev. comp. of ath-MIR169c |
MIR87 | CAGCCAAGGAUGACUUGCCG | * | prec9825 | chr5:15887904<15888116 | ath-MIR169c |
MIR88 | UUGGAUUGAAGGGAGCUCCU | * | prec14336 | chr2:19001715>19001919 | ath-MIR159c |
MIR89 | CACUCCCUCCGUUUCACAAUAUAA | * | prec12509 | chr1:19239433>19239652 | |
MIR90 | CUUAUAUUAUGAAACGAAGGGA | prec134 | chr3:4118509<4118685 | ||
MIR91 | UUGACAGAAGAGAGUGAGCACAC | * | prec18871 | chr5:3456648<3456734 | ath-MIR156dath-MIR156d |
MIR92 | GUUCAAUAAAGCUGUGGGAA | prec18774 | chr2:4149414<4149545 | 3' arm of ath-MIR396a |