| IGR sequence: | igr3097#chr5#x1=15478185#l=2723 |
|---|---|
| Mature miRNA sequence: | CAGCCAAGGAUGACUUGCCG |
| encoded miRNA: | MIR87 |
| Precursor location: | 662 - 874 (negative strand) |
| precursor length: | 213 (73 basepairs) |
| MIR position: | 1 - 20 (855 - 874) |
| MIR length: | 20 (18 paired bases) |
| miRNA location TIGR v3: | chr5:15478846<15479058 |
| miRNA location TIGR v5: | chr5:15887904<15888116 |
| Folding energy: | -70.32 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
CAGCCAAGGA UGACUUGCCG GUAGCUUGUA UUAUGAUUAC UCUAUAUUCG AUUUAUAUUA 60
:(((((-((( (((((((((( ((((((((,, ,,<<-<<<<< <<<<<<____ ________>>
UGGAGAUGAU GGUUUAUAUA UAUUUACUUA UCUACAUAGU UUUAGUUGAU UUUUUUUCGU 120
>>>>>->>>> ->>,,,,,<< <<<<<-<<<< -<<<<<<<-- ---<<<-<<< -<<<<<<<<<
ACGUAAUAUA AUACGAAAAA GUAUUUACUU AUUUAUAUAU GUGUGUUGGG GCAAGAAGUG 180
<_________ _>>>>>>>>> >->>>->>>- ------->>> >>>->->>>> ----->>>>>
UAACCAAGCU AGCCCGGCAA GUCAUCUAUG GCU 213
>>,,)))))) )--))))))) )))))))-)) )))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 2 | 10 |
| 2 | At1g54160.1 | 68408.m05664 CCAAT-binding factor B subunit -related | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|430_45524-45617_1-20
- gnl|BL_ORD_ID|430_45523+45617_76-95