| IGR sequence: | igr4997#chr3#x1=22923315#l=10188 |
|---|---|
| Mature miRNA sequence: | UCGGACCAGGCUUCAUUCCC |
| encoded miRNA: | MIR5 |
| Precursor location: | 6888 - 6997 (positive strand) |
| precursor length: | 110 (42 basepairs) |
| MIR position: | 91 - 110 (6978 - 6997) |
| MIR length: | 20 (15 paired bases) |
| miRNA location TIGR v3: | chr3:22930202>22930311 |
| miRNA location TIGR v5: | chr3:22933186>22933295 |
| Folding energy: | -46.80 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR166b |
| Belongs to miRNAs-targets cluster: | cluster027 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
GGGACUGUUG UCUGGCUCGA GGACUCUUAU UCUAAUACAA UCUCAUUUGA AUACAUUCAG 60
((((-((--( (((((--((( -(((-((-(( ((((((-((( (((((((((( (____)))))
********** **********
AUCUGAUGAU UGAUUAGGGU UUUAGUGUCG UCGGACCAGG CUUCAUUCCC 110
)--)))-))) )))))))))) ---))-)))- )))--))))) )--))-))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g52150.1 | 68408.m08708 HD-Zip transcription factor | 2 | 2 |
| 2 | At1g52150.2 | 68408.m08709 HD-Zip transcription factor | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|1999_118134+118263_111-130
- gnl|BL_ORD_ID|1300_66425+66554_111-130