IGR sequence:igr825#chr4#x1=4610337#l=1222
Mature miRNA sequence:CUAAUUUGAAACGGAGGGAAUA
encoded miRNA:MIR52
Precursor location:325 - 570 (negative strand)
precursor length:246 (66 basepairs)
MIR position:225 - 246 (325 - 346)
MIR length:22 (17 paired bases)
miRNA location TIGR v3:chr4:4610661<4610906
miRNA location TIGR v5:chr4:5645667<5645912
Folding energy:-43.04
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UACUCCAAUC CGUUUUAAAU UAAUUGUCGU UUAAAGAAAA UUUUACGUAU AUUUAAAAAA    60
:::(((--(( (((((((((( ((-((((((( ((,,<<<<<< ----<<<<<< <<<_____>> 

                                                                  
UAUAUGUUUU UCUAUUUUAC UCUAAUAAGU GUAUUUUUUU GUAUUAUCAU CAAUUAAUUA   120
>>>>>>>>>> >>>,,,,,,, ,,,,,,,<<< <<<--<<<<< <--------< <<<<______ 

                                                                  
AUAAACUACA AAAAUAAAAA UAACAUUGGA AAAUUUGUCA AAAAUCUGCA UUAAAACAUA   180
__________ __________ ____>>>>>- -------->> >>>>-->>>> >>,,,,,,,, 

                                                ****** ********** 
AUACAACAAC UGAUUUAAAU CAAAAUUUAA CUCUAAAGUG ACAACUAAUU UGAAACGGAG   240
,,,,,,,,,, ,<<-<<<<<< ____>>>>>> ->>,,))))) ))))-))))) )))))))))- 

******
GGAAUA  246
))):::

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs