| IGR sequence: | igr2174#chr5#x1=9803029#l=11421 |
|---|---|
| Mature miRNA sequence: | UGGAGAAGCAGGGCACGUGC |
| encoded miRNA: | MIR82 |
| Precursor location: | 8580 - 8661 (positive strand) |
| precursor length: | 82 (27 basepairs) |
| MIR position: | 1 - 20 (8580 - 8599) |
| MIR length: | 20 (17 paired bases) |
| miRNA location TIGR v3: | chr5:9811608>9811689 |
| miRNA location TIGR v5: | chr5:9852688>9852769 |
| Folding energy: | -34.30 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster026 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
UGGAGAAGCA GGGCACGUGC GAACACAAAU GAAAUCGAUC GGUACUUGUU GAUCAUAUUU 60
:((((-((-( (((((((((( (((,,<____ >,,,,,<<<< <<______>> >>>>,,,,,)
UCGCACGUGU UCUACUACUC CA 82
)))))))))) )))-))-))) ):
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g56010.1 | 68408.m05888 NAC1 / No apical meristem (NAM) protein family | 1 | 2 |
| 2 | At1g56010.2 | 68408.m05889 NAC1 / No apical meristem (NAM) protein family | 1 | 2 |
| 3 | At3g15170.1 | 68410.m01722 NAM-related protein | 2 | 1 |
| 4 | At5g07680.1 | 68412.m00813 NAM (no apical meristem)-related protein | 2 | 2 |
| 5 | At5g07680.2 | 68412.m00814 NAM (no apical meristem)-related protein | 2 | 2 |
| 6 | At5g53950.1 | 68412.m06069 No apical meristem (NAM) protein CUC2 | 2 | 1 |
| 7 | At5g61430.1 | 68412.m06973 NAM, no apical meristem, - like protein | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|3113_155064-155156_74-93
- gnl|BL_ORD_ID|3113_155064+155156_1-20
- gnl|BL_ORD_ID|968_113710+113831_1-20
- gnl|BL_ORD_ID|968_113710-113831_103-122
- gnl|BL_ORD_ID|396_77782-77855_55-74
- gnl|BL_ORD_ID|396_77782+77855_1-20