| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | GUAGCCAAGGAUGACUUGCCU |
| encoded miRNA: | MIR13 |
| Precursor location: | 1593 - 1740 (negative strand) |
| precursor length: | 148 (54 basepairs) |
| MIR position: | 1 - 21 (1720 - 1740) |
| MIR length: | 21 (19 paired bases) |
| miRNA location TIGR v3: | chr3:9873604<9873751 |
| miRNA location TIGR v5: | chr3:9873594<9873741 |
| Folding energy: | -65.04 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *
GUAGCCAAGG AUGACUUGCC UGAUCUUUUU CACCUCCAUG AUUCAAUUUG UAAUUCAUGG 60
(((((((((( (-((((-((( (((-(((--- -((((-((-( (((((((--- ---------(
GUUUUGGAUU AUUAUACAUU CAAAAGUAUA AUAAUUUGAA AUCAUGUUGA AUCUUGCGGG 120
((((--(((( (((((((___ _____))))) ))))))--)) )))--))))) )))-))-)))
UUAGGUUUCA GGCAGUCUCC UUGGCUAU 148
)-)))--))) )))))))))) ))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 2 | 10 |
| 2 | At1g54160.1 | 68408.m05664 CCAAT-binding factor B subunit -related | 2 | 8 |
| 3 | At1g72830.1 | 68408.m07728 CCAAT-binding factor B subunit homolog -related | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2510_67223-67328_1-21
- gnl|BL_ORD_ID|2510_67223+67328_86-106
- gnl|BL_ORD_ID|2154_158030-158181_1-21
- gnl|BL_ORD_ID|2154_158031+158181_131-151
- gnl|BL_ORD_ID|323_84895+85045_131-151
- gnl|BL_ORD_ID|323_84894-85045_1-21