| IGR sequence: | igr4444#chr3#x1=20692045#l=9635 |
|---|---|
| Mature miRNA sequence: | UCCAAAGGGAUCGCAUUGAUC |
| encoded miRNA: | MIR20 |
| Precursor location: | 7608 - 7747 (positive strand) |
| precursor length: | 140 (46 basepairs) |
| MIR position: | 1 - 21 (7608 - 7628) |
| MIR length: | 21 (20 paired bases) |
| miRNA location TIGR v3: | chr3:20699652>20699791 |
| miRNA location TIGR v5: | chr3:20702636>20702775 |
| Folding energy: | -47.80 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster009 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *
UCCAAAGGGA UCGCAUUGAU CCUAAUUAAG CUGAUUUAUU CCCCAAUAAU UGUUUUUUUU 60
(((((((((( ((((((-((( ((-((-(((( (,<<_____> >,,,,,,,,< <<<<<<<<--
UUCCUUCUCA AUCGAAAGAU GGAAGAAAAA CAAAUUCCAA ACAUUUUGCU UACUUUUCCG 120
<<<<------ <<<____>>> >>>>>>>>>> >>>,,,,,,, ,,,,,,,))) ))-))----)
GAUCAUGCGA UCUCUUUGGA 140
)))))))))) ))))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g12820.1 | 68408.m01345 transport inhibitor response 1 (TIR1), putative | 2 | 2 |
| 2 | At3g26810.1 | 68410.m03071 transport inhibitor response 1 (TIR1), putative | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|2699_72476-72570_75-95
- gnl|BL_ORD_ID|2699_72476+72570_1-21
- gnl|BL_ORD_ID|2325_26142-26236_75-95
- gnl|BL_ORD_ID|2325_26142+26236_1-21