| IGR sequence: | igr3289#chr5#x1=16380038#l=5991 |
|---|---|
| Mature miRNA sequence: | UCGGACCAGGCUUCAUUCCCCUCA |
| encoded miRNA: | MIR70 |
| Precursor location: | 3654 - 3794 (negative strand) |
| precursor length: | 141 (46 basepairs) |
| MIR position: | 118 - 141 (3654 - 3677) |
| MIR length: | 24 (19 paired bases) |
| miRNA location TIGR v3: | chr5:16383691<16383831 |
| miRNA location TIGR v5: | chr5:16792749<16792889 |
| Folding energy: | -48.40 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR166e |
| Belongs to miRNAs-targets cluster: | cluster027 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UGAGGGGAAU GUUGUCUGGC ACGAGGCCCU UAACUUAGAU CUAUAUUUGA UUAUAUAUAU 60
:((((((((( (--((((((- -(((-(-(-( (((((,<<<< -<<<<<____ ______>>>>
***
AUGUCUCUUC UUUAUUCAUU AGUCUAUACA UGAAUGAUCA UUUUACGGUU AAUGACGUCG 120
>->>>>,,,, ,<<<<<<<<< <_____>>-> >>>>>>>,,, ,,,,,,)))) ))-)-)-)))
********** ********** *
GACCAGGCUU CAUUCCCCUC A 141
--))))))-- )))))))))) :
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g30490.1 | 68408.m03374 HD-Zip transcription factor Athb-9 | 4 | 1 |
| 2 | At1g52150.1 | 68408.m08708 HD-Zip transcription factor | 4 | 2 |
| 3 | At1g52150.2 | 68408.m08709 HD-Zip transcription factor | 4 | 2 |
| 4 | At2g34710.1 | 68409.m03852 HD-Zip transcription factor Athb-14 | 4 | 1 |
Rice homologs
- gnl|BL_ORD_ID|31_95956-96072_94-117