IGR sequence:igr2585#chr1#x1=11134319#l=5910
Mature miRNA sequence:UGAAGCUGCCAGCAUGAUCUG
encoded miRNA:MIR36
Precursor location:3219 - 3560 (positive strand)
precursor length:342 (116 basepairs)
MIR position:1 - 21 (3219 - 3239)
MIR length:21 (18 paired bases)
miRNA location TIGR v3:chr1:11137537>11137878
miRNA location TIGR v5:chr1:11137537>11137878
Folding energy:-108.30
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** ********** *                                           
UGAAGCUGCC AGCAUGAUCU GGUAAUCGCU ACAUACGACA UACACACAUC ACUAAACUUC    60
:((((((((- ((-((((((( ((((---((( (--((-(((( ((((((((-( (((,,,,,,, 

                                                                  
UUUAUAAUUU AUGCACACAC AUACAGCUCU UAAUGGCCAC AACUCAAAGU UAUAAUUAGU   120
,,<<_____> >,,,<<<<<< <<<<,[[[__ ____]]],,, ,,,,,,,[[[ [[[[[[[[[- 

                                                                  
GCAUGAUCUC UAGUUAUUUG ACUGCUUUUA AUAUAUGUUU AUGGAUUCAC GCAUGUGUGU   180
[______]-] ]]]]]]]--] ]]],,,,,,, [[[[[[[[[[ [[[,,,,,{{ {{{-{{{{{{ 

                                                                  
GUAUGUACAU AAUUUACAUG CAUGCACUUU GUGUAUGGUA CACAUCAAUU UGAACCCGUU   240
{{{{{{{___ ____}}}}}} }}}}}}}--} }}}},{{{{{ -{{{----{{ {{{{____}} 

                                                                  
CAAAAUUCUG UUUUUAUUAG UAUAUAUAUA GAUGUAUGUG GUGUGUGUGU CAGUGUGUGU   300
}}}}----}} }---}}}}}, ,,,,,,]]]] ]]]]]]]]], >>>>>>>>>> ,))))))))) 

                                              
GUGUGUUUAU AGAUAGUAGU ACUAGGUCAU CCUGCAGCUU CA  342
)))))))--) )--))))--) )))))))))) -))))))))) ):

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs