| IGR sequence: | igr3494#chr2#x1=16598245#l=6010 |
|---|---|
| Mature miRNA sequence: | UCCAAAGGGAUCGCAUUGAUC |
| encoded miRNA: | MIR20 |
| Precursor location: | 2332 - 2444 (positive strand) |
| precursor length: | 113 (36 basepairs) |
| MIR position: | 1 - 21 (2332 - 2352) |
| MIR length: | 21 (19 paired bases) |
| miRNA location TIGR v3: | chr2:16600576>16600688 |
| miRNA location TIGR v5: | chr2:16659189>16659301 |
| Folding energy: | -34.70 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster009 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *
UCCAAAGGGA UCGCAUUGAU CCUAAUUAAG GUGAAUUCUC CCCAUAUUUU CUUUAUAAUU 60
(((((((((( (-((((-((( ((-(((((,< <-<<____>> ->>,,,,,,, ,,,,,,,,,,
GGCAAAUAAA UCACAAAAAU UUGCUUGGUU UUGGAUCAUG CUAUCUCUUU GGA 113
<<<<<<<___ ________>> >>>>>))))) --)))))))) )-)))))))) )))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g12820.1 | 68408.m01345 transport inhibitor response 1 (TIR1), putative | 2 | 2 |
| 2 | At3g26810.1 | 68410.m03071 transport inhibitor response 1 (TIR1), putative | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|2699_72476-72570_75-95
- gnl|BL_ORD_ID|2699_72476+72570_1-21
- gnl|BL_ORD_ID|2325_26142-26236_75-95
- gnl|BL_ORD_ID|2325_26142+26236_1-21