| IGR sequence: | igr2011#chr4#x1=10447721#l=2403 |
|---|---|
| Mature miRNA sequence: | AGCCAAGGAUGACUUGCCGG |
| encoded miRNA: | MIR77 |
| Precursor location: | 320 - 398 (negative strand) |
| precursor length: | 79 (30 basepairs) |
| MIR position: | 1 - 20 (379 - 398) |
| MIR length: | 20 (19 paired bases) |
| miRNA location TIGR v3: | chr4:10448040<10448118 |
| miRNA location TIGR v5: | chr4:11483046<11483124 |
| Folding energy: | -40.10 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
AGCCAAGGAU GACUUGCCGG GUUUUUUUAC CAAUGAAUCU AAUUAACUGA UUCUGGUGUC 60
((((((((-( (((((((((( (------((( ((--(((((_ ________)) ))))))))))
CGGCAAGUUG ACCUUGGCU 79
)))))))))) -))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54160.1 | 68408.m05664 CCAAT-binding factor B subunit -related | 2 | 8 |
| 2 | At5g12840.1 | 68412.m08219 CCAAT box binding factor/ transcription factor Hap2a | 2 | 2 |
| 3 | At5g12840.2 | 68412.m08220 CCAAT box binding factor/ transcription factor Hap2a | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|3091_167854+167959_87-106
- gnl|BL_ORD_ID|3091_167854-167959_1-20
- gnl|BL_ORD_ID|2404_2611-2700_1-20
- gnl|BL_ORD_ID|2404_2611+2700_71-90
- gnl|BL_ORD_ID|2314_13778+13867_71-90
- gnl|BL_ORD_ID|2314_13778-13867_1-20
- gnl|BL_ORD_ID|1188_62445+62548_85-104
- gnl|BL_ORD_ID|1181_130578-130683_1-20
- gnl|BL_ORD_ID|1181_130578+130683_87-106