| IGR sequence: | igr1201#chr3#x1=4804107#l=2637 |
|---|---|
| Mature miRNA sequence: | CCGGCAAGUCAUCCUUGGCU |
| encoded miRNA: | MIR76 |
| Precursor location: | 1618 - 1718 (positive strand) |
| precursor length: | 101 (33 basepairs) |
| MIR position: | 82 - 101 (1699 - 1718) |
| MIR length: | 20 (15 paired bases) |
| miRNA location TIGR v3: | chr3:4805724>4805824 |
| miRNA location TIGR v5: | chr3:4805724>4805824 |
| Folding energy: | -41.90 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster008 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
AGCCAAGGUC AACUUGCCAG ACACGAAUCA ACAGAUUGUG AAUGAGACCA AAUCAAUGGU 60
((((((((-- -(((((((,, ,<<<-<<<<_ ___>>>>>>> ,,,,,<<<<< ______>>>>
********* ********** *
CAUAAACCGG UUGGGUUUAA ACCGGCAAGU CAUCCUUGGC U 101
>,<<<<<<__ ___>>>>>>, ,,,))))))) ---))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54150.1 | 68408.m05663 zinc finger (C3HC4-type RING finger) protein family | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2404_2611-2700_1-20
- gnl|BL_ORD_ID|2404_2611+2700_71-90
- gnl|BL_ORD_ID|2314_13778+13867_71-90
- gnl|BL_ORD_ID|2314_13778-13867_1-20
- gnl|BL_ORD_ID|1188_62445+62548_85-104