| IGR sequence: | igr2700#chr5#x1=13210713#l=32091 |
|---|---|
| Mature miRNA sequence: | AAGUUCAAGAAAGCUGUGGAAA |
| encoded miRNA: | MIR60 |
| Precursor location: | 9267 - 9383 (negative strand) |
| precursor length: | 117 (38 basepairs) |
| MIR position: | 96 - 117 (9267 - 9288) |
| MIR length: | 22 (18 paired bases) |
| miRNA location TIGR v3: | chr5:13219979<13220095 |
| miRNA location TIGR v5: | chr5:13629037<13629153 |
| Folding energy: | -39.50 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster004 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UUCCCACAGC UUUCUUGAGC UUCCAAAAUG CUUAAUCUUA AAGUUUUUUU UCUUCUUACU 60
:::((((((( (((((((((( (((((,,,,< <<<_______ >>>><<<<<< <<<<---<<_
***** ********** *******
UUUGUUUAAG AAAAAAACAA UGGAAAUGAA AAAGAAAGUU CAAGAAAGCU GUGGAAA 117
___>>-->>> >>>>>>>,,, ))))------ ------)))) )))))))))) )))):::
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g68450.1 | 68408.m07175 expressed protein | 3 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1525_12976+13098_1-22
- gnl|BL_ORD_ID|1525_12976-13098_102-123
- gnl|BL_ORD_ID|393_115431+115553_1-22
- gnl|BL_ORD_ID|393_115431-115553_102-123