| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | AGGCAAGUCAUCCUUGGCUA |
| encoded miRNA: | MIR56 |
| Precursor location: | 5150 - 5296 (positive strand) |
| precursor length: | 147 (41 basepairs) |
| MIR position: | 128 - 147 (5277 - 5296) |
| MIR length: | 20 (17 paired bases) |
| miRNA location TIGR v3: | chr3:9877161>9877307 |
| miRNA location TIGR v5: | chr3:9877151>9877297 |
| Folding energy: | -37.46 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster008 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UAGCCAAAGA GACUGCCUGA AACCUAACCC GCAAGAUUCA ACAUGAUCUC AAAUUAUUAU 60
(((((((-(( (((((((((( ------(((- -((-(((((( (,,<<____> >,<<<<<<<<
ACCUUUUAAA CGCAUAAUAA UCCAAAAUCC ACGAACUUAA AAUUGAAUCA UGGAGGUGAA 120
__________ ___>>>>>>> >,,,,,,,,, ,,,,,,,,,, ,,)))))))- ))--)))---
*** ********** *******
AAAGAUCAGG CAAGUCAUCC UUGGCUA 147
-----))))) )-))))-))- )))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54150.1 | 68408.m05663 zinc finger (C3HC4-type RING finger) protein family | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2510_67224-67328_1-20
- gnl|BL_ORD_ID|2510_67224+67328_86-105
- gnl|BL_ORD_ID|2154_158032-158181_1-20
- gnl|BL_ORD_ID|2154_158032+158181_131-150
- gnl|BL_ORD_ID|323_84895+85044_131-150
- gnl|BL_ORD_ID|323_84895-85044_1-20