| IGR sequence: | igr922#chr3#x1=3597929#l=5132 |
|---|---|
| Mature miRNA sequence: | AUGAGAAUCUUGAUGAUGCUGCA |
| encoded miRNA: | MIR21 |
| Precursor location: | 1870 - 1970 (negative strand) |
| precursor length: | 101 (37 basepairs) |
| MIR position: | 79 - 101 (1870 - 1892) |
| MIR length: | 23 (19 paired bases) |
| miRNA location TIGR v3: | chr3:3599798<3599898 |
| miRNA location TIGR v5: | chr3:3599798<3599898 |
| Folding energy: | -37.40 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster011 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UGGAGCAUCA UCAAGAUUCA CAAAUCAUCA AGUAUUCGUG UAAAUAAACC CAUUUAUGAU 60
:(-((((((( (((((((((- ((-((((((( ((---((-(( (((((_____ _)))))))--
** ********** ********** *
UAGAUUUUUG AUGUAUGUAU GAGAAUCUUG AUGAUGCUGC A 101
--))--)))) )))-))---) )-)))))))) ))))))))-) :
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g28550.1 | 68409.m03139 AP2 domain transcription factor RAP2.7 | 3 | 2 |
| 2 | At4g36920.1 | 68411.m04757 floral homeotic protein APETALA2 | 3 | 3 |
| 3 | At5g12900.1 | 68412.m01364 expressed protein | 3 | 1 |
| 4 | At5g60120.1 | 68412.m06823 AP2 domain transcription factor, putative | 2 | 3 |
Rice homologs
- gnl|BL_ORD_ID|311_87588-87677_68-90
- gnl|BL_ORD_ID|311_87588+87677_1-23