| IGR sequence: | igr5553#chr1#x1=25868910#l=5170 |
|---|---|
| Mature miRNA sequence: | GAGUUCCCCCAAACACUUCA |
| encoded miRNA: | MIR34 |
| Precursor location: | 871 - 950 (positive strand) |
| precursor length: | 80 (27 basepairs) |
| MIR position: | 1 - 20 (871 - 890) |
| MIR length: | 20 (17 paired bases) |
| miRNA location TIGR v3: | chr1:25869780>25869859 |
| miRNA location TIGR v5: | chr1:26273652>26273731 |
| Folding energy: | -30.50 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster010 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
GAGUUCCCCC AAACACUUCA GUGGAAUUAA CUGUUAGCUU ACUGAAUAAC AAAUUUCCAA 60
((((((-((- -((((((((( -(((((---- -(((((____ ______)))) )---)))))-
UGAAGUGUUC AGGAGAACUC 80
)))))))))- -))-))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g50030.1 | 68408.m05142 Target of Rapamycin (TOR) protein (pTOR) | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|2328_172534+172815_1-20
- gnl|BL_ORD_ID|2319_12130+12411_1-20
- gnl|BL_ORD_ID|2693_32562-32911_331-350
- gnl|BL_ORD_ID|2693_32562-32629_49-68
- gnl|BL_ORD_ID|2693_32562+32629_1-20
- gnl|BL_ORD_ID|2693_32562+32911_1-20
- gnl|BL_ORD_ID|2693_32278-32343_47-66
- gnl|BL_ORD_ID|2693_32278+32593_1-20
- gnl|BL_ORD_ID|2693_32705-32772_49-68
- gnl|BL_ORD_ID|2693_32705-32915_192-211
- gnl|BL_ORD_ID|2693_32705+32772_1-20
- gnl|BL_ORD_ID|2693_32705+32915_1-20
- gnl|BL_ORD_ID|2693_32848-33201_335-354
- gnl|BL_ORD_ID|2693_32848-33058_192-211
- gnl|BL_ORD_ID|2693_32848-32915_49-68
- gnl|BL_ORD_ID|2693_32848+33058_1-20
- gnl|BL_ORD_ID|2693_32848+33201_1-20
- gnl|BL_ORD_ID|2437_51501-51850_331-350
- gnl|BL_ORD_ID|2437_51501-51568_49-68
- gnl|BL_ORD_ID|2437_51501+51850_1-20
- gnl|BL_ORD_ID|2437_51501+51568_1-20
- gnl|BL_ORD_ID|2437_51217-51282_47-66
- gnl|BL_ORD_ID|2437_51217+51532_1-20
- gnl|BL_ORD_ID|2437_51644-51711_49-68
- gnl|BL_ORD_ID|2437_51644-51854_192-211
- gnl|BL_ORD_ID|2437_51644+51711_1-20
- gnl|BL_ORD_ID|2437_51644+51854_1-20
- gnl|BL_ORD_ID|2437_51787-52140_335-354
- gnl|BL_ORD_ID|2437_51787-51997_192-211
- gnl|BL_ORD_ID|2437_51787-51854_49-68
- gnl|BL_ORD_ID|2437_51787+51997_1-20
- gnl|BL_ORD_ID|2437_51787+52140_1-20
- gnl|BL_ORD_ID|986_78821+79087_1-20
- gnl|BL_ORD_ID|986_78821-79087_248-267
- gnl|BL_ORD_ID|986_78821-78912_73-92
- gnl|BL_ORD_ID|986_79331+79422_1-20
- gnl|BL_ORD_ID|986_79331+79582_1-20
- gnl|BL_ORD_ID|986_79331-79582_233-252
- gnl|BL_ORD_ID|986_79331-79422_73-92
- gnl|BL_ORD_ID|986_79171+79422_1-20
- gnl|BL_ORD_ID|986_79171-79247_58-77
- gnl|BL_ORD_ID|986_79171-79422_233-252
- gnl|BL_ORD_ID|986_79504+79757_1-20
- gnl|BL_ORD_ID|986_79504-79582_60-79
- gnl|BL_ORD_ID|986_79504-79757_235-254
- gnl|BL_ORD_ID|986_79666-79757_73-92
- gnl|BL_ORD_ID|986_78996+79087_1-20
- gnl|BL_ORD_ID|986_78996-79247_233-252
- gnl|BL_ORD_ID|986_78996-79087_73-92