| IGR sequence: | igr961#chr1#x1=3960414#l=2862 |
|---|---|
| Mature miRNA sequence: | GAUUGAGCCGUGCCAAUAUCAC |
| encoded miRNA: | MIR58 |
| Precursor location: | 955 - 1038 (negative strand) |
| precursor length: | 84 (30 basepairs) |
| MIR position: | 63 - 84 (955 - 976) |
| MIR length: | 22 (17 paired bases) |
| miRNA location TIGR v3: | chr1:3961368<3961451 |
| miRNA location TIGR v5: | chr1:3961368<3961451 |
| Folding energy: | -36.00 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster023 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
GAGAUAUUAG UGCGGUUCAA UCAAAUAGUC GUCCUCUUAA CUCAUGGAGA ACGGUGUUGU 60
::((((((-( --(((((((( ((-((((((( ((-((((___ _____))))- ))))--))))
******** ********** ****
UCGAUUGAGC CGUGCCAAUA UCAC 84
)-)))))))) ))--)-)))) ))::
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g45160.1 | 68409.m05078 scarecrow transcription factor family | 2 | 7 |
| 2 | At3g60630.1 | 68410.m06267 scarecrow transcription factor family | 2 | 7 |
| 3 | At4g00150.1 | 68411.m00015 scarecrow-like transcription factor 6 (SCL6) | 2 | 7 |
Rice homologs
- gnl|BL_ORD_ID|3254_118405-118515_90-111
- gnl|BL_ORD_ID|3254_118405+118515_1-22