| IGR sequence: | igr783#chr2#x1=4089755#l=13602 |
|---|---|
| Mature miRNA sequence: | UUCCACAGCUUUCUUGAACU |
| encoded miRNA: | MIR15 |
| Precursor location: | 1048 - 1178 (negative strand) |
| precursor length: | 131 (37 basepairs) |
| MIR position: | 1 - 20 (1159 - 1178) |
| MIR length: | 20 (19 paired bases) |
| miRNA location TIGR v3: | chr2:4090802<4090932 |
| miRNA location TIGR v5: | chr2:4149415<4149545 |
| Folding energy: | -39.40 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster033 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
UUCCACAGCU UUCUUGAACU GCAAAACUUC UUCAGAUUUU UUUUUUUUUC UUUUGAUAUC 60
(((((((((( ((-((((((( (((((-(-(( --((((,,,, ,,,,,,,,<< ____>>,,,,
UCUUACGCAU AAAAUAGUGA UUUUCUUCAU AUCUCUGCUC GAUUGAUUUG CGGUUCAAUA 120
,,,,,,,,,, ,,,,,,<<<< ______>>>> ,,,))))--- ))--)-)))) ))))))))-)
AAGCUGUGGG A 131
)))))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g34530.1 | 68409.m03832 hypothetical protein | 2 | 1 |
| 2 | At3g14110.1 | 68410.m01600 tetratricopeptide repeat (TPR)-containing protein | 2 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1525_12876-12996_1-20
- gnl|BL_ORD_ID|1525_12876+12996_102-121
- gnl|BL_ORD_ID|393_115331-115451_1-20
- gnl|BL_ORD_ID|393_115331+115451_102-121